DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msk and mtr-4

DIOPT Version :9

Sequence 1:NP_524780.1 Gene:msk / 44747 FlyBaseID:FBgn0026252 Length:1049 Species:Drosophila melanogaster
Sequence 2:NP_501757.1 Gene:mtr-4 / 177824 WormBaseID:WBGene00012342 Length:1026 Species:Caenorhabditis elegans


Alignment Length:844 Identity:159/844 - (18%)
Similarity:287/844 - (34%) Gaps:279/844 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   347 HMVAVIQDVIFPIMSFTDSDQELWE---SDPYEYIRLKFDIFEDYA-TPVPAAQSLL---HSMCK 404
            |.||:..:..|         .||.|   ::|.:|...:.|.|:..| ..:...||:|   |:...
 Worm    97 HEVAIPPNAEF---------AELRENSGTEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAG 152

  Fly   405 KRKGILPKAMATIMQ-----IITSP-----NADNKQKDGALHMIGTL-ADVLLKKASYRDQVESM 458
            |.. :...|:|..::     |.|||     |...::.:.....:|.: .||.|..    |....:
 Worm   153 KTV-VATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMTGDVTLNP----DASCLV 212

  Fly   459 LTTYVFPEFQNPAGHMRARACWV----LHY------------------------FCDVQIKN--- 492
            :||.:..........:.....||    :||                        |....|.|   
 Worm   213 MTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQ 277

  Fly   493 -PQVLAEIMRLTTNALLTD-------------------KELPVKVE--------AAIGLQMFISS 529
             .|.:|.|.:...|.:.||                   :.:.||.|        |..||   .::
 Worm   278 FAQWVASIKQQPVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGL---ATA 339

  Fly   530 QDEAPQYVEAQIKEITK---ELLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFS 591
            .|.|..:.:.:....|:   .:|.|||...:.|..|.   ||.:|:.       :.|:..|.:..
 Worm   340 GDSAGSFNKRRTGGGTQGDSNVLKIIRSVASNDGLNC---IVFSFSR-------KECESYAISLK 394

  Fly   592 QV---LESEEGS----DEKAITAMS--------LLNTIETLLSVMEEHPDVLLNLHPIVINVVGH 641
            .:   .:.|:|.    .|.||..:|        :||.:..|...:..|...|:   ||:...:..
 Worm   395 DMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLM---PILKETIEI 456

  Fly   642 IFQHNITD--FYEETFSLVYDLTAKAISPEMWQMLELIYQVF----KKDGIDYFIDIMPALHNYV 700
            :|...:..  |..||||:..::.|:.:             ||    |.||.|         :.|:
 Worm   457 LFGEGLVKVLFATETFSMGLNMPARTV-------------VFTSARKFDGSD---------NRYI 499

  Fly   701 T-------VDTPAFLSNPNRLLAILDMCKTMLTSSPGEDPECHAAKLMEVIILQCKGQIDSVIHM 758
            |       ..........:|...||     |:.|:...|.    ||  ::|    ||..|.:...
 Worm   500 TSGEYIQMAGRAGRRGKDDRGTVIL-----MVDSAMSADD----AK--QII----KGATDPLNSQ 549

  Fly   759 FVELALSRLTREVQSSELRT--MCLQVVIAALYYNPQLLLSI--LDKMSQQNNDSISAHFIKQWL 819
            |      |||..:..:.:|.  |.:..:|...::..|....|  :||...|....| |.|...|.
 Worm   550 F------RLTYNMVLNLMRVEGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKI-ASFNFPWE 607

  Fly   820 HDTDCFLGIHDRKLCVLGLCTLISLGEAKPQVLSEVAGKIVPALILLFDGLKRAYESRAQEEE-- 882
            ::....:.:.|:.             ||..|.:.::..:  |..|:.|....|.::.::.:.:  
 Worm   608 NEMRTLVDLQDQL-------------EATRQRIIQIQRE--PKYIVGFLHAGRLFKVKSGDRDFK 657

  Fly   883 -----EDEEEEDGDD-------CEEALSSDED---------------DMDE----MAPDYLDKLA 916
                 :.::|::.||       |:..::.:.:               |:.:    ..|..:|::.
 Worm   658 WGILNQFKKEQNPDDRNDQIYLCDMMIAINTEGRFDPTNPATLVPGFDLPKRRWIRVPMTIDRIT 722

  Fly   917 EFAKTKGNESGFEVKAEIKDDDADSDGDAEESVGDLNETGLESFTT-----------PIDDEENE 970
            ..:..:     .:|.|:|...|           |.:...|:.:..|           ||.|.|.:
 Worm   723 AISAVR-----LKVPADIDKPD-----------GQMRLDGMMAAATKRFGNQIPLLDPIQDMEIK 771

  Fly   971 SAIDEYWTFKEVITALSAQDQAWYALL-TSNLT--------PEQAKALQEVVVTADQRKAAKES 1025
            :.     ..||:|    |::::....| |.::|        .:|.:..|:.|...:..||.::|
 Worm   772 TV-----EMKELI----AREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKS 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mskNP_524780.1 SXM1 4..1013 CDD:227943 155/830 (19%)
IBN_N 24..103 CDD:281761
mtr-4NP_501757.1 Dob10 97..1026 CDD:226947 159/844 (19%)
DEAD 130..273 CDD:278688 25/147 (17%)
HELICc 427..515 CDD:197757 22/112 (20%)
rRNA_proc-arch 571..825 CDD:289976 48/294 (16%)
DSHCT 857..1019 CDD:285374
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4581
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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