DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msk and Skiv2l

DIOPT Version :9

Sequence 1:NP_524780.1 Gene:msk / 44747 FlyBaseID:FBgn0026252 Length:1049 Species:Drosophila melanogaster
Sequence 2:NP_067312.2 Gene:Skiv2l / 108077 MGIID:1099835 Length:1244 Species:Mus musculus


Alignment Length:925 Identity:177/925 - (19%)
Similarity:306/925 - (33%) Gaps:289/925 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 DLITKEIFS--------------QW---MEICRQVAD--RAVPDSS----------------HLD 249
            ||:.||..:              ||   :::...|.|  |.:|..:                ||:
Mouse   256 DLVLKEAATVVSTPEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLE 320

  Fly   250 DDE------RTEFPYWKTKKWALHIMVRMFER--YGSPSNVVSEKYQKFAEWYLPTFSQ-GVL-- 303
            ..:      .|........::|:.:..:...|  |.||...:|.  |||.: :..||.. |:|  
Mouse   321 QHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSN--QKFRD-FRNTFGDVGLLTG 382

  Fly   304 --------EVLLKILDQYRNRVYVSPRVLTDV-------LNYLKNAVSHAYTWK----LIKPHMV 349
                    ..|:...:..|:.:|....|:.|:       ::|:.:| .....|:    ::..|:.
Mouse   383 DVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVHYINDA-ERGVVWEEVLIMLPEHVS 446

  Fly   350 AVIQDVIFP-IMSFTDSDQELWESDPYEYIRLK---FDIFEDYATPVPAAQSLLHSMCKKRKGIL 410
            .::.....| .:.|.|     |..      |||   ..:....|.|||....|.       .|..
Mouse   447 IILLSATVPNALEFAD-----WIG------RLKRRQIYVISTVARPVPLEHYLF-------TGNS 493

  Fly   411 PKAMATIMQIITSPNADNKQKDGALHMIGTLADVLLKKASYRDQVESMLTTYVFPEFQNPAGHMR 475
            ||....:..::.|        .||.|..|..|.|..||    :::.....|:...:..:..|..:
Mouse   494 PKTQGELFLLLDS--------RGAFHTQGYYAAVEAKK----ERMSKHAQTFGAKQPTHQGGPAQ 546

  Fly   476 ARACWVLHYFCDVQIKNPQVLAEIMRLTTNALLTDKELPVKVEAAIGLQMFISSQDEAPQYVEAQ 540
            .|..::            .:||        :|.|..:|||.|        |..|:....:.... 
Mouse   547 DRGVYL------------SLLA--------SLRTRAQLPVVV--------FTFSRGRCDEQASG- 582

  Fly   541 IKEITKELLTIIRETENEDLTNVMQKIVCTFTEQLLPVATEICQHLATTFSQVLESEEGSDEKAI 605
                    ||.:      |||...:|             :||  ||  ...:.|....|||.:..
Mouse   583 --------LTSL------DLTTSSEK-------------SEI--HL--FLQRCLARLRGSDRQLP 616

  Fly   606 TAMSLLNTIETLLSVMEEHPDVLLNLHPIVINVVGHIFQHNITD--FYEETFSLVYDLTAKAISP 668
            ..:.:...:...|.|  .|..:|    ||:..:|..:|...:..  |..|||::..::.|:.:  
Mouse   617 QVLHMSELLRRGLGV--HHSGIL----PILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTV-- 673

  Fly   669 EMWQMLELIYQVFKKDGIDYFIDIMPALHNYVTVDTPAFLSNPNRLLAILDMCKTMLTSSPGEDP 733
                    ::...:|.....|.|::|.  .||.:...|                    ...|.||
Mouse   674 --------VFDSMRKHDGSTFRDLLPG--EYVQMAGRA--------------------GRRGLDP 708

  Fly   734 ECHAAKLMEVIILQCKGQIDSV--IHMFVELALSRLTREVQSSELR---TMCLQVV-IAALYYNP 792
                   ...:||.|||::..:  :|..:....|:|     .|:.|   ||.|.:: :.||....
Mouse   709 -------TGTVILLCKGRVPEMADLHRMMMGKPSQL-----QSQFRLTYTMILNLLRVDALRVED 761

  Fly   793 QLLLSILDKMSQQNNDSISAHFIKQWLHDTDCFLGIHDRKLCVLGLCTLISLGE--AKPQVLSEV 855
            .:..|..:..|::::   .||  :|.|.|....||..:.. .|.|  .|..|.|  :..:.|:|.
Mouse   762 MMKRSFSEFPSRKDS---KAH--EQALADLTKRLGALEEP-DVTG--QLADLPEYYSWAEELTET 818

  Fly   856 AGKIVPALILLFDGLKRAYESRAQEEEEDEE--------EEDGDD----------CEEALSSDED 902
            ...|...::...:|||.....|....:.:|.        :...:.          |::.:.||..
Mouse   819 QNMIQRRIMESVNGLKSLSVGRVVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSDNP 883

  Fly   903 -DMDEMAPD--YLDKLAEFAKTKGNESGFEVKAEIKDDDADSDGDAEESVGDLNETGLESFTTPI 964
             |.....||  :.|.|.          ||::..        .:|..|.:|..|....:.:.:|.:
Mouse   884 RDKGPATPDVPHPDDLI----------GFKLFL--------PEGPCEHTVAKLQPGDVAAISTKV 930

  Fly   965 DDEENESAIDEYWTFKE-----------VITALS-----AQDQAWYALLTSNLTPEQAKALQEVV 1013
            .....|...:::...::           |.||:.     ||.   |......|.|.....|::|.
Mouse   931 LRVNGEKISEDFSKRQQPKFRKDPPLAAVTTAVQELLRLAQS---YPAGPPTLDPINDLQLKDVA 992

  Fly  1014 VTADQRKAAKESKLI 1028
            |.....:|.|..:||
Mouse   993 VVEGGLRARKLEELI 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mskNP_524780.1 SXM1 4..1013 CDD:227943 171/908 (19%)
IBN_N 24..103 CDD:281761
Skiv2lNP_067312.2 Dob10 288..1242 CDD:226947 171/893 (19%)
DEAD 312..459 CDD:278688 26/150 (17%)
HELICc 621..705 CDD:197757 20/121 (17%)
rRNA_proc-arch 762..1040 CDD:289976 53/275 (19%)
DSHCT 1070..1236 CDD:285374
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4581
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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