DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ergic53 and Lman2l

DIOPT Version :9

Sequence 1:NP_524776.1 Gene:ergic53 / 44679 FlyBaseID:FBgn0035909 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_001100370.1 Gene:Lman2l / 301343 RGDID:1311393 Length:109 Species:Rattus norvegicus


Alignment Length:83 Identity:21/83 - (25%)
Similarity:37/83 - (44%) Gaps:0/83 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 ILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKDGTVPFWEYGGNAIASSESVRVA 72
            :|.||....|....|.|...|.......:.::|...||......:...|...|||:..::.:|:.
  Rat    25 LLLFLLLLGSGSGPGPLHVRAGQAVEYLKREHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLT 89

  Fly    73 PSLRSQKGAIWTKSQTNF 90
            |.::|::||:|.:....|
  Rat    90 PDMQSKQGALWNRVVRGF 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ergic53NP_524776.1 lectin_ERGIC-53_ERGL 33..258 CDD:173890 14/58 (24%)
Lman2lNP_001100370.1 lectin_L-type 51..>103 CDD:301310 13/51 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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