DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lk6 and camk1db

DIOPT Version :9

Sequence 1:NP_651986.2 Gene:Lk6 / 44672 FlyBaseID:FBgn0017581 Length:1142 Species:Drosophila melanogaster
Sequence 2:NP_001074127.2 Gene:camk1db / 791176 ZFINID:ZDB-GENE-070112-1872 Length:392 Species:Danio rerio


Alignment Length:434 Identity:127/434 - (29%)
Similarity:189/434 - (43%) Gaps:72/434 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 RHKEEMQKKRRKKRISSSLHSSTFQELYKLTGEILGEGAYASVQTCVNIYTDLEYAVKVIDK--I 152
            |..||......||::..      .:::::.. ||||.||::.|.......|...||||.|.|  :
Zfish     3 RGSEESVNGSWKKQVDD------IRKIFEFK-EILGTGAFSEVVLAQEKATGDMYAVKCIPKKAL 60

  Fly   153 PG-----HARARVFREVETFHHCQGHLGILQLIEFFEDDEKFYLVFEKINGGPLLSRIQEHICFS 212
            .|     .....|.|:::       |..|:.|.:.:|.....||:.:.::||.|..||.|...::
Zfish    61 RGKESGIENEIAVLRKIK-------HENIVALEDIYESPSHLYLIMQLVSGGELFDRIVERGFYT 118

  Fly   213 EHEASQIIKEIASGLDFLHKKGIAHRDLKPENILCVKTDSLCPIKICDFDLGSGIKFTTDISSPA 277
            |.:||.:||::...:::||..||.||||||||:|.........|.|.||.|........||.|  
Zfish   119 EQDASALIKQVLDAVNYLHSLGIVHRDLKPENLLYFNPHEESKIMISDFGLSKMEGAANDIMS-- 181

  Fly   278 ATPQLLTPVGSAEFMAPEVVDLFVGEAHYYDKRCDLWSLGVIAYILLCGYPPFSGNCGEDCGWNR 342
                  |..|:..::||||:     ....|.|..|.||:||||||||||||||           .
Zfish   182 ------TACGTPGYVAPEVL-----AQKPYSKAVDCWSIGVIAYILLCGYPPF-----------Y 224

  Fly   343 GENCRTCQELLFESIQEGHFSFPEAEWHDVSDEAKDLISNLLVKKASNRLSAEAVLNHPWI---- 403
            .||    ...|||.|.:..:.|....|.|:||.|||.|:||:.|....|.:.:..|.||||    
Zfish   225 DEN----DSKLFEQILKAEYEFDSPYWDDISDSAKDFINNLMQKDPEKRFTCDEALRHPWIAGDT 285

  Fly   404 RMCEQEPPASKHGRRHKALQTPSNIRRNHQSAREISQFAESAMA--VKRVVLQHFSMRYDYMKER 466
            .:|:         ..|:::.  ..:::|...|:....|..:|:.  ::|:.|........:.|:.
Zfish   286 ALCK---------NIHESVS--RQMKKNFAKAKWRQAFNATAVIRHMRRLQLGSSMDSSQHRKQN 339

  Fly   467 PNIYQPSQAYMDAYSDENYNPKP---PGHYTRN---RSQRNPAS 504
            |.........:|..|....:..|   |...||.   ..|..|::
Zfish   340 PTSMPGKSQSVDVSSVHRNDCSPKQTPNSSTRTGKPERQTRPST 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lk6NP_651986.2 STKc_Mnk 115..403 CDD:270992 102/294 (35%)
S_TKc 117..403 CDD:214567 102/292 (35%)
camk1dbNP_001074127.2 STKc_CaMKI 20..280 CDD:270985 101/295 (34%)
S_TKc 24..281 CDD:214567 102/292 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D330091at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.