DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lk6 and Pnck

DIOPT Version :9

Sequence 1:NP_651986.2 Gene:Lk6 / 44672 FlyBaseID:FBgn0017581 Length:1142 Species:Drosophila melanogaster
Sequence 2:XP_006229634.1 Gene:Pnck / 29660 RGDID:69249 Length:346 Species:Rattus norvegicus


Alignment Length:374 Identity:110/374 - (29%)
Similarity:162/374 - (43%) Gaps:64/374 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 KRRKKRISSSLHSSTFQELYKLTGEILGEGAYASVQTCVNIYTDLEYAVKVIDK--IPGHARARV 160
            |::.:.|||         :|::. |.||.||::.|.......:....|:|.|.|  :.| ..|.|
  Rat     8 KKQTEDISS---------VYEIR-EKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRG-KEALV 61

  Fly   161 FREVETFHHCQGHLGILQLIEFFEDDEKFYLVFEKINGGPLLSRIQEHICFSEHEASQIIKEIAS 225
            ..|:...... .|..|:.|.:..|.....||..|.:.||.|..||.|...::|.:||.::.::..
  Rat    62 ENEIAVLRRI-SHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLG 125

  Fly   226 GLDFLHKKGIAHRDLKPENILCVKTDSLCPIKICDFDLGSGIKFTTDISSPAATPQLLTPVGSAE 290
            .:.:||..||.||||||||:|.........|.:.||.|          |...|...|.|..|:..
  Rat   126 AVSYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGL----------SKIQAGNMLGTACGTPG 180

  Fly   291 FMAPEVVDLFVGEAHYYDKRCDLWSLGVIAYILLCGYPPFSGNCGEDCGWNRGENCRTCQELLFE 355
            ::|||::     |...|.|..|:|:||||:||||||||||......:               ||.
  Rat   181 YVAPELL-----EQKPYGKAVDVWALGVISYILLCGYPPFYDESDPE---------------LFS 225

  Fly   356 SIQEGHFSFPEAEWHDVSDEAKDLISNLLVKKASNRLSAEAVLNHPWI------------RMCE- 407
            .|....:.|....|.|:|:.|||.|.:||.:....|.:.:..|.|.||            .:.| 
  Rat   226 QILRASYEFDSPFWDDISESAKDFIRHLLERDPQKRFTCQQALQHLWISGDAALDRDILGSVSEQ 290

  Fly   408 -QEPPASKHGRRHKALQTPSNIRRNHQSAREISQFAESAMAVKRVVLQH 455
             |:..|..|.:|  |....|.:|.    .|::.|..|...|.::.:.:|
  Rat   291 IQKNFARTHWKR--AFNATSFLRH----IRKLGQSPEGEEASRQGMTRH 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lk6NP_651986.2 STKc_Mnk 115..403 CDD:270992 91/289 (31%)
S_TKc 117..403 CDD:214567 91/287 (32%)
PnckXP_006229634.1 STKc_CaMKI_beta 14..290 CDD:271071 96/317 (30%)
S_TKc 18..273 CDD:214567 91/287 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D330091at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.