DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lk6 and Camk2d

DIOPT Version :9

Sequence 1:NP_651986.2 Gene:Lk6 / 44672 FlyBaseID:FBgn0017581 Length:1142 Species:Drosophila melanogaster
Sequence 2:NP_001333564.1 Gene:Camk2d / 108058 MGIID:1341265 Length:533 Species:Mus musculus


Alignment Length:636 Identity:156/636 - (24%)
Similarity:251/636 - (39%) Gaps:152/636 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 ISSSLHSSTFQELYKLTGEILGEGAYASVQTCVNIYTDLEYAVKVID--KIPGHARARVFREVET 166
            ::|:...:.|.:.|:|..| ||:||::.|:.|:.|.|..|||.|:|:  |:......::.||...
Mouse     1 MASTTTCTRFTDEYQLFEE-LGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARI 64

  Fly   167 FHHCQ--GHLGILQLIEFFEDDEKFYLVFEKINGGPLLSRIQEHICFSEHEASQIIKEIASGLDF 229
               |:  .|..|::|.:...::...||||:.:.||.|...|.....:||.:||..|::|...::.
Mouse    65 ---CRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNH 126

  Fly   230 LHKKGIAHRDLKPENILCVKTDSLCPIKICDFDLGSGIKFTTDISS---PAATPQLLTPVGSAEF 291
            .|..||.||||||||:|.........:|:.||  |..|:...|..:   .|.||         .:
Mouse   127 CHLNGIVHRDLKPENLLLASKSKGAAVKLADF--GLAIEVQGDQQAWFGFAGTP---------GY 180

  Fly   292 MAPEVVDLFVGEAHYYDKRCDLWSLGVIAYILLCGYPPFSGNCGEDCGWNRGENCRTCQELLFES 356
            ::|||:     ....|.|..|:|:.|||.||||.|||||         |:..      |..|::.
Mouse   181 LSPEVL-----RKDPYGKPVDMWACGVILYILLVGYPPF---------WDED------QHRLYQQ 225

  Fly   357 IQEGHFSFPEAEWHDVSDEAKDLISNLLVKKASNRLSAEAVLNHPWIRMCEQEPPASKHGRRHKA 421
            |:.|.:.||..||..|:.||||||:.:|....:.|::|...|.||||  |::...||...|    
Mouse   226 IKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKRITASEALKHPWI--CQRSTVASMMHR---- 284

  Fly   422 LQTPSNIRRNHQSAREISQFAESAMAVKRVVLQHFSMRYDYMKERPNIYQPSQAYMDAYSDENYN 486
             |...:..:...:.|::    :.|:....:..::||.....:|:...:...::|.:.....||. 
Mouse   285 -QETVDCLKKFNARRKL----KGAILTTMLATRNFSAAKSLLKKPDGVKINNKANVVTSPKENI- 343

  Fly   487 PKPPGHYTRNRSQRNPASSLCGYGGRMSSMHGQRANSRRSSRNASRNASAIYPNSGGFKTLNVHE 551
            |.|                                              |:.|     :|..:|.
Mouse   344 PTP----------------------------------------------ALEP-----QTTVIHN 357

  Fly   552 EDDDDEGLEAFGHIDDDDEWSRSRREYQQQCETLGEDRFRRQSGSEGDEVEDDEDGENEDYQHYK 616
            .|.:.|..|:.....:|::....::|..:..|.|               :|...:|:.|.|....
Mouse   358 PDGNKESTESSNTTIEDEDVKARKQEIIKVTEQL---------------IEAINNGDFEAYTKIC 407

  Fly   617 HYWRELDEEEGDDYLYEQQQRVDDKFGEEEFEDEPKEETQADNLKLSKAYVEQVGETNVEKSKPQ 681
            .......|.|....|.|...     |....||:...:..:..:..:...:|..||          
Mouse   408 DPGLTAFEPEALGNLVEGMD-----FHRFYFENALSKSNKPIHTIILNPHVHLVG---------- 457

  Fly   682 DDNG--GYIREDLIMDNMDMKKNTQQSEFAKLTIMRNDAQTEENKIMQQQD 730
            ||..  .|||....||...|.|.               .|:||.::..::|
Mouse   458 DDAACIAYIRLTQYMDGSGMPKT---------------MQSEETRVWHRRD 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lk6NP_651986.2 STKc_Mnk 115..403 CDD:270992 99/294 (34%)
S_TKc 117..403 CDD:214567 99/292 (34%)
Camk2dNP_001333564.1 STKc_CaMKII 12..303 CDD:270988 107/336 (32%)
CaMKII_AD 380..507 CDD:285524 30/159 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D330091at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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