DRSC/TRiP Functional Genomics Resources

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Protein Alignment cwo and her11

DIOPT Version :10

Sequence 1:NP_524775.1 Gene:cwo / 44669 FlyBaseID:FBgn0259938 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_073777454.1 Gene:her11 / 445409 ZFINID:ZDB-GENE-040824-4 Length:388 Species:Danio rerio


Alignment Length:432 Identity:93/432 - (21%)
Similarity:139/432 - (32%) Gaps:176/432 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 NET-NGHAAHPVKYESEAAVSSFPY-CTESSLNFSTSATAYSEDDAEYATGRRNKTSRQDPLSHR 68
            |.| .|.::..|::.    .||||| ..:|:..|:.:.|.        ...||.|.         
Zfish    92 NSTRRGKSSRLVRFH----FSSFPYPRMKSTPTFNMTKTE--------GIKRRLKP--------- 135

  Fly    69 IIEKRRRDRMN---SCLADL-------SRLIPPQYQRKGRGRIEKTEIIEMAIRHLKHLQSECQQ 123
            :|||:||||:|   ..|.||       :||..|        ::||.||:::|::::|   ...::
Zfish   136 VIEKKRRDRINHNLDALRDLLFKNTADTRLQNP--------KLEKAEILDLAVQYIK---KTIRK 189

  Fly   124 KESDYRSGYMDCMKEAAKFLYD----VHMQDFCHRLLGRLQEHIDEMFKTDCYKSTRSCHMPDNV 184
            .|:...|..|||.....:|:..    ::..|:|.|            |||               
Zfish   190 TETARNSNQMDCKSTQNQFVISPAGPLYTSDYCRR------------FKT--------------- 227

  Fly   185 SASSGSPHQAYHPPLCHLRDMLATSASDVEHSQDHNDVKDLSFRNHLNQLQRSQQAAAAAAVAAA 249
                                            .:.|:|        |..|..||.          
Zfish   228 --------------------------------SEQNEV--------LLNLGVSQN---------- 242

  Fly   250 AVAVANGSSPASNAGVDSKVPLTNGGGTGGAPPAADNVPSNSTGSG----SAAACAGGNSNSSGS 310
                .:|||...|..|..|..|.:..|.........:..|:..||.    |.:.....:|..|..
Zfish   243 ----LSGSSKTGNKLVSQKGFLLSPPGQNYHQELLLHPESSLYGSSLLRQSTSPSISSSSQYSSP 303

  Fly   311 NSSNAASSTICPPAGG-SCPAK------------VTPLAAHQQPHQAPVITSTA--PHHHHHHTD 360
            .||...:||.|.|:.. .||:.            :|||:.     |.||....|  ||       
Zfish   304 PSSPTFTSTSCSPSSSPPCPSTSCAAFPDQLSPLITPLSL-----QRPVFVPQAILPH------- 356

  Fly   361 SSHHDFESSREPILHTDTSNMHSPPPRDLLLQQHPHLAHSHH 402
                         :..|.:..|||.   |.|:|.|....:.|
Zfish   357 -------------MTRDLTPPHSPV---LALRQDPFPLPNQH 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cwoNP_524775.1 bHLH-O_Cwo_like 62..121 CDD:381446 20/68 (29%)
ORANGE 126..168 CDD:128787 8/45 (18%)
her11XP_073777454.1 None

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