DRSC/TRiP Functional Genomics Resources

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Protein Alignment cwo and her2

DIOPT Version :9

Sequence 1:NP_524775.1 Gene:cwo / 44669 FlyBaseID:FBgn0259938 Length:698 Species:Drosophila melanogaster
Sequence 2:XP_005155978.1 Gene:her2 / 30300 ZFINID:ZDB-GENE-980526-274 Length:133 Species:Danio rerio


Alignment Length:151 Identity:41/151 - (27%)
Similarity:68/151 - (45%) Gaps:35/151 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 TGRRNKTSRQDPLSHRIIEKRRRDRMNSCLADLSRLIPPQYQ-RKGRGRIEKTEIIEMAIRHLK- 115
            || :.:|..:.|    ::||.||||:|.|:..|..|:..:.: .:...::||.:|:|||:.:|| 
Zfish    11 TG-KERTKLRKP----VVEKMRRDRINKCIEQLKILLKTEIKASQPCSKLEKADILEMAVIYLKN 70

  Fly   116 ----HLQSECQQKESDYRSGYMDCMKEAAKFLYDVHMQDFCHRLLGRLQEHIDEMFKTDCYKSTR 176
                |.:|..:.....|..||..|::|.|:|| ..|.|         .|:|         .|...
Zfish    71 TADAHARSYSEAHAQSYADGYSRCIEETARFL-SAHKQ---------TQKH---------SKPVD 116

  Fly   177 SCHMPDNVSASSGSPHQAYHP 197
            ||.:...:     :.|..:.|
Zfish   117 SCQITSEI-----AKHGLWRP 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cwoNP_524775.1 HLH 66..118 CDD:306515 19/57 (33%)
ORANGE 126..168 CDD:128787 12/41 (29%)
her2XP_005155978.1 HLH 13..70 CDD:238036 19/60 (32%)
ORANGE 85..133 CDD:128787 17/72 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573836
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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