DRSC/TRiP Functional Genomics Resources

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Protein Alignment cwo and her3

DIOPT Version :10

Sequence 1:NP_524775.1 Gene:cwo / 44669 FlyBaseID:FBgn0259938 Length:698 Species:Drosophila melanogaster
Sequence 2:NP_571155.1 Gene:her3 / 30289 ZFINID:ZDB-GENE-980526-204 Length:229 Species:Danio rerio


Alignment Length:87 Identity:29/87 - (33%)
Similarity:47/87 - (54%) Gaps:10/87 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LSHRIIEKRRRDRMNSCLADLSRLIPPQYQRKGRGR-IEKTEIIEMAIRHLKHLQS-------EC 121
            :|..::||:||.|:|.||..|..|:........|.| :||.:|:|:.::||:|||:       .|
Zfish    19 VSKPLMEKKRRARINKCLNQLKSLLESACSNNIRKRKLEKADILELTVKHLRHLQNTKRGLSKAC 83

  Fly   122 QQKESDYRSGYMDCMKEAAKFL 143
            ...|  |.:||..|:...:.:|
Zfish    84 DSAE--YHAGYRSCLNTVSHYL 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cwoNP_524775.1 bHLH-O_Cwo_like 62..121 CDD:381446 22/63 (35%)
ORANGE 126..168 CDD:128787 5/18 (28%)
her3NP_571155.1 bHLH_SF 24..78 CDD:469605 21/53 (40%)
ORANGE 88..129 CDD:128787 5/16 (31%)

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