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Protein Alignment SmD1 and LSM5
DIOPT Version :9
Sequence 1: | NP_524774.1 |
Gene: | SmD1 / 44668 |
FlyBaseID: | FBgn0261933 |
Length: | 124 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_011073.1 |
Gene: | LSM5 / 856889 |
SGDID: | S000000948 |
Length: | 93 |
Species: | Saccharomyces cerevisiae |
Alignment Length: | 81 |
Identity: | 22/81 - (27%) |
Similarity: | 35/81 - (43%) |
Gaps: | 11/81 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 KLSHETVTIELKNGTQIHGTITGVDVAMNTHLK-SVRMTIKNRDP-------VHLETLSIRGNNI 65
|..::.|.|.|::..:..||:.|.|..:|..|: :|...|...|. .|...:.:.||||
Yeast 14 KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNI 78
Fly 66 RYFILP--DSLPLETL 79
. .::| ...|.|.|
Yeast 79 A-ILVPGGKKTPTEAL 93
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD1 | NP_524774.1 |
Sm_D1 |
2..93 |
CDD:212471 |
22/81 (27%) |
LSM5 | NP_011073.1 |
LSm5 |
6..85 |
CDD:212479 |
19/71 (27%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
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