DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD1 and LSM6

DIOPT Version :9

Sequence 1:NP_524774.1 Gene:SmD1 / 44668 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_010666.2 Gene:LSM6 / 851984 SGDID:S000002786 Length:86 Species:Saccharomyces cerevisiae


Alignment Length:66 Identity:16/66 - (24%)
Similarity:29/66 - (43%) Gaps:4/66 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLS----IRGNNIR 66
            ||..:..:||.::|.:|....|.:..:|..||..|.|.....::.:...|...:    :||..:.
Yeast    15 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLRGTQVM 79

  Fly    67 Y 67
            |
Yeast    80 Y 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 16/66 (24%)
LSM6NP_010666.2 Sm_like 14..82 CDD:412267 16/66 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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