DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD1 and Naa38

DIOPT Version :9

Sequence 1:NP_524774.1 Gene:SmD1 / 44668 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_084359.1 Gene:Naa38 / 78304 MGIID:1925554 Length:125 Species:Mus musculus


Alignment Length:65 Identity:16/65 - (24%)
Similarity:27/65 - (41%) Gaps:6/65 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRD------PVHLETLSIRGNNI 65
            |..|.::|:.|.:.:|..:.|.....|...|..|.|.:..:|..|      |..|....:.|::|
Mouse    45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHI 109

  Fly    66  65
            Mouse   110  109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 16/65 (25%)
Naa38NP_084359.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..42
LSMD1 42..115 CDD:212486 16/65 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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