Protein Alignment SmD1 and SNRPD1

DIOPT Version :9

• Sequence 1: NP_524774.1
• Gene: SmD1 / 44668
• FlyBaseID: FBgn0261933
• Length: 124
• Species: Drosophila melanogaster
• Sequence 2: NP_008869.1
• Gene: SNRPD1 / 6632
• HGNCID: 11158
• Length: 119
• Species: Homo sapiens
• Alignment Length: 124
• Identity: 98/124 - (79%)
• Similarity: 110/124 - (88%)
• Gaps: 5/124 - (4%)

  Fly     1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNI 65
            ||||||||||||||||||||||||:|||||||||:||||||:|:||:|||:||.|||||||||||
Human     1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65

  Fly    66 RYFILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGARGRGGPRGRGRGRASGRR 124
            |||||||||||:|||:|..||.|:||:::  |..|||||| ||||  |||||||...||
Human    66 RYFILPDSLPLDTLLVDVEPKVKSKKREA--VAGRGRGRG-RGRG--RGRGRGRGGPRR 119

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SmD1	NP_524774.1	Sm_D1	2..93	CDD:212471	77/90 (86%)
SNRPD1	NP_008869.1	Sufficient for interaction with CLNS1A. /evidence=ECO:0000269|PubMed:11747828	1..80		70/78 (90%)
		Sm_D1	2..93	CDD:212471	77/90 (86%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	88..119		21/35 (60%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C165154133
Domainoid	1	1.000	123	1.000	Domainoid score	I5619
eggNOG	1	0.900	-	-		E1_COG1958
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H107532
Inparanoid	1	1.050	190	1.000	Inparanoid score	I3893
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG54535
OrthoDB	1	1.010	-	-		D1579192at2759
OrthoFinder	1	1.000	-	-		FOG0004375
OrthoInspector	1	1.000	-	-		oto89361
orthoMCL	1	0.900	-	-		OOG6_102452
Panther	1	1.100	-	-	LDO	PTHR23338
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1357
SonicParanoid	1	1.000	-	-		X3100
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
User_Submission	0	0.000	Not matched by this tool.
	16	15.800