powered by:
Protein Alignment SmD1 and snrpb
DIOPT Version :9
Sequence 1: | NP_524774.1 |
Gene: | SmD1 / 44668 |
FlyBaseID: | FBgn0261933 |
Length: | 124 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_991230.1 |
Gene: | snrpb / 402966 |
ZFINID: | ZDB-GENE-040426-1819 |
Length: | 239 |
Species: | Danio rerio |
Alignment Length: | 116 |
Identity: | 29/116 - (25%) |
Similarity: | 43/116 - (37%) |
Gaps: | 27/116 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 19 LKNGTQIHGTITGVDVAMNTHL-----------KSVRMTIKNRDPVHLETLSIRGNNIRYFILPD 72
|::|....||....|..||..| |:.:...:....| |..:.:||.|
Zfish 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRV-LGLVLLRGEN-------- 76
Fly 73 SLPLETLLIDDTPKSKT---KKKDSGRVGNRGRGRGARGRGGPRGRGRGRA 120
|.::.::..|...| :...:|..|..|.||.| |||.|.|....:|
Zfish 77 ---LVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAA-GRGVPAGAPMAQA 123
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD1 | NP_524774.1 |
Sm_D1 |
2..93 |
CDD:212471 |
17/87 (20%) |
snrpb | NP_991230.1 |
Sm_B |
5..83 |
CDD:212464 |
15/73 (21%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
ZFIN |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.900 |
|
Return to query results.
Submit another query.