DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmD1 and Lsm10

DIOPT Version :9

Sequence 1:NP_524774.1 Gene:SmD1 / 44668 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_001102446.1 Gene:Lsm10 / 366468 RGDID:1584914 Length:122 Species:Rattus norvegicus


Alignment Length:105 Identity:30/105 - (28%)
Similarity:52/105 - (49%) Gaps:6/105 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRY 67
            |:..|..|..:..|::|::.:...|.|..||..||..|.:|..|.:....|.|:.|.:.|.|:||
  Rat    17 LIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRY 81

  Fly    68 FILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGAR 107
            ..:||.:.: |..|:...:...:.::.|     |:|:|.|
  Rat    82 VHIPDGVNI-TATIEQQLQIIHRVRNFG-----GKGQGRR 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 25/89 (28%)
Lsm10NP_001102446.1 LSm10 8..85 CDD:212480 21/67 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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