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Protein Alignment SmD1 and Lsm10
DIOPT Version :9
Sequence 1: | NP_524774.1 |
Gene: | SmD1 / 44668 |
FlyBaseID: | FBgn0261933 |
Length: | 124 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001102446.1 |
Gene: | Lsm10 / 366468 |
RGDID: | 1584914 |
Length: | 122 |
Species: | Rattus norvegicus |
Alignment Length: | 105 |
Identity: | 30/105 - (28%) |
Similarity: | 52/105 - (49%) |
Gaps: | 6/105 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 LVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRY 67
|:..|..|..:..|::|::.:...|.|..||..||..|.:|..|.:....|.|:.|.:.|.|:||
Rat 17 LIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRY 81
Fly 68 FILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGAR 107
..:||.:.: |..|:...:...:.::.| |:|:|.|
Rat 82 VHIPDGVNI-TATIEQQLQIIHRVRNFG-----GKGQGRR 115
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD1 | NP_524774.1 |
Sm_D1 |
2..93 |
CDD:212471 |
25/89 (28%) |
Lsm10 | NP_001102446.1 |
LSm10 |
8..85 |
CDD:212480 |
21/67 (31%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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