DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmD1 and Lsm10

DIOPT Version :10

Sequence 1:NP_524774.1 Gene:SmD1 / 44668 FlyBaseID:FBgn0261933 Length:124 Species:Drosophila melanogaster
Sequence 2:NP_610615.1 Gene:Lsm10 / 36141 FlyBaseID:FBgn0033554 Length:141 Species:Drosophila melanogaster


Alignment Length:95 Identity:24/95 - (25%)
Similarity:35/95 - (36%) Gaps:3/95 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSL 74
            |...:|.|:|.|.|.:.|.|...|..|...|.......:|......:...:|...||...:|..|
  Fly    23 LQGHSVLIDLHNETSVAGIIDVADGHMTCELTHAVFIDRNGGQHPFDHFMVRNRMIRQIHIPSYL 87

  Fly    75 PLETLLIDDTPKSKTKKKDSGRVGNRGRGR 104
            ..|..|.....:...::|   ||..:|..|
  Fly    88 DAEQELRSAMERGVLRRK---RVETKGGKR 114

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmD1NP_524774.1 Sm_D1 2..93 CDD:212471 19/82 (23%)
Lsm10NP_610615.1 LSm10 7..84 CDD:212480 15/60 (25%)

Return to query results.
Submit another query.