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Protein Alignment SmD1 and lsm10
DIOPT Version :10
| Sequence 1: | NP_524774.1 |
Gene: | SmD1 / 44668 |
FlyBaseID: | FBgn0261933 |
Length: | 124 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_001373552.1 |
Gene: | lsm10 / 100536270 |
ZFINID: | ZDB-GENE-090508-7 |
Length: | 120 |
Species: | Danio rerio |
| Alignment Length: | 106 |
Identity: | 31/106 - (29%) |
| Similarity: | 50/106 - (47%) |
Gaps: | 9/106 - (8%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 3 LVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRY 67
||..|..|..:..|::|::.:...|.:..||..||..|::|....:......::.|.|.|.|:||
Zfish 17 LVILLQGLHGQVTTVDLRDESTARGRVINVDAFMNIRLENVLYRDRRGRKSSMDDLFITGRNVRY 81
Fly 68 FILPDSLP-LETLLIDDTPKSKTKKKDSGRVGNRGRGRGAR 107
..:||.:. :||: :...||.. ||.|.|.|.|.:
Zfish 82 VHIPDQINIIETI---EAQLSKIH-----RVRNFGAGGGRK 114
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| SmD1 | NP_524774.1 |
Sm_D1 |
2..93 |
CDD:212471 |
25/90 (28%) |
| lsm10 | NP_001373552.1 |
LSm10 |
8..85 |
CDD:212480 |
19/67 (28%) |
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