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Protein Alignment SmD1 and LOC100360750
DIOPT Version :9
Sequence 1: | NP_524774.1 |
Gene: | SmD1 / 44668 |
FlyBaseID: | FBgn0261933 |
Length: | 124 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_017454452.1 |
Gene: | LOC100360750 / 100360750 |
RGDID: | 2321508 |
Length: | 80 |
Species: | Rattus norvegicus |
Alignment Length: | 66 |
Identity: | 19/66 - (28%) |
Similarity: | 30/66 - (45%) |
Gaps: | 8/66 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 FLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKS----VRMTIKNRDPVHLETLSIRGNNIR 66
||.::....|.::|.:|....|.:..:|..||..|:. |...:||: .....|||||:.
Rat 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNK----YGDAFIRGNNVL 71
Fly 67 Y 67
|
Rat 72 Y 72
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
SmD1 | NP_524774.1 |
Sm_D1 |
2..93 |
CDD:212471 |
19/66 (29%) |
LOC100360750 | XP_017454452.1 |
LSm6 |
7..74 |
CDD:212473 |
19/66 (29%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1958 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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