DRSC/TRiP Functional Genomics Resources

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Protein Alignment wech and trim2b

DIOPT Version :10

Sequence 1:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster
Sequence 2:XP_009304581.1 Gene:trim2b / 558046 ZFINID:ZDB-GENE-090312-70 Length:669 Species:Danio rerio


Alignment Length:712 Identity:162/712 - (22%)
Similarity:270/712 - (37%) Gaps:165/712 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 ASPTGGS---SVNAQTPPSGN-FICDIH-NEMLRYVCDYCRKLVCQCCTLHEHKEHSYASIQSFM 228
            |||...|   :|....|..|. .||..| .::....|..|...||:.|...||.||...|::..:
Zfish     6 ASPDSSSEECTVLEALPGKGTALICSQHKGKVSALYCLVCENAVCEDCMNGEHAEHPTDSLEKAV 70

  Fly   229 VGSKEKLEGAIESSQVGTRCIKSSIDKALAFIRLIERNCSELSDNIRKAFRQFIIAIEDRERFLL 293
            ......|:..::|::.....|:.::......::.:....|.:.::|..:|.:....::.|:..||
Zfish    71 DQQLAALQDKVDSAKNRLPQIREAVQYLREILQQLNSQRSSIEEDIHSSFSELHKTLDTRKSVLL 135

  Fly   294 DFVEKLRQRRLAILHDQMAGLKSALAGLSETSDMLSKVADNACNMDQIEIAMKLTNGQRQMEQFA 358
            ..:|.....:..:|..|:..|....:.::....:.|:..|.......::...:.  |:| :...:
Zfish   136 MELEVTYGLKQKVLQAQLDTLLQEESAINYNCSLTSEALDGGSKASVLQAHKEA--GER-LGDLS 197

  Fly   359 GIYKDLQPKQ--------EVFAFAPPDYSLLQDIRNQGGVILVDDKNLPIVSSSNG----IVPSV 411
            .....|||::        |:       ..|.:.|.|.|.::..:.......:|.:|    ||...
Zfish   198 SQGLPLQPEENDQLDLMMEI-------EGLRKSIHNLGTIVTTNAVASQTEASGDGLEQCIVGQP 255

  Fly   412 SSV---------------NAVAAASVGVVGGVAGVVGG--VGVSNG-------------LDLA-- 444
            :||               ||:.:|.|....|  .:..|  |.:.||             ..||  
Zfish   256 ASVIITTRDKAGGLCKTGNAIISAEVYTPDG--SIADGEIVDMKNGTYEFQYTVKKEGNFSLALR 318

  Fly   445 -FGMNMPNNPLSVASSSVRRPLLRDNSFRIPSPIMQPRGGSACGMSSGMSSAALDWELNGLR--- 505
             :..::..:|..:..||              ||...|...:|...:|..||.      .|.|   
Zfish   319 LYDQHIKGSPFQLKVSS--------------SPDDSPTTTTAANAASTGSSD------GGARKRS 363

  Fly   506 -SSPGLH------------FSAPR-------------------------TTQAIPGCMD---LVK 529
             .|||..            ||.|:                         ..|.:..|.:   |:.
Zfish   364 AKSPGSRSRQKGVRRGGSLFSTPKKRVNPIEDDLIFRIGTKGRNKGEFTNLQGVAACSEGRILIA 428

  Fly   530 VRNSNALSL---------SFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKF 585
            ..|:..:.:         .|...|...||:.||.|:.|...|.::::|..|..|.:|:.:|..|.
Zfish   429 DSNNQCVQIFSNTGEFQSRFGVRGRSPGQLQRPTGVAVHPNGDIIIADYDNKWVSIFSSEGKYKA 493

  Fly   586 KFGRKGVGNGEFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDV 650
            |     :|:|....|.|:.||.:..:||||.....|.||..||..:.||||.|....||..|...
Zfish   494 K-----LGSGRLMGPKGVSVDQNGHVIVVDNKACTVFIFQPSGKLITKFGSRGNGDRQFAGPHFA 553

  Fly   651 AVNSRRQIVVTDSRNHRIQQFDSEGRFIRQIVFDNHGQTKG-IASPRGVCYTPTGNIIVSDFDNH 714
            |||:..:|::||..||.::.|:::|.|:  :.|.::|:..| ..:|.||.....|||||:|:.|.
Zfish   554 AVNNNNEIIITDFHNHSVKVFNADGEFL--LKFGSNGEGNGQFNAPTGVAVDVNGNIIVADWGNS 616

  Fly   715 CLYLIDPDINDILSVKGHEGSG-FHEFNR--------PSGLCCDDEGRIIVADSKNQRILVF 767
            .:.:.|             ||| |..:..        |.||....:|.::||||.|....|:
Zfish   617 RIQVFD-------------GSGSFLSYINTAADPLYGPQGLALTSDGHVVVADSGNHCFKVY 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wechNP_524772.2 Bbox1 123..163 CDD:380815
Bbox2_TRIM66-like 187..228 CDD:380852 13/41 (32%)
CC_brat-like 232..343 CDD:475168 15/110 (14%)
NHL_TRIM71_like 528..810 CDD:271324 79/259 (31%)
NHL repeat 553..592 CDD:271324 11/38 (29%)
NHL repeat 600..639 CDD:271324 17/38 (45%)
WD40 repeat 603..640 CDD:293791 16/36 (44%)
WD40 repeat 647..684 CDD:293791 12/36 (33%)
NHL repeat 647..683 CDD:271324 12/35 (34%)
WD40 repeat 692..736 CDD:293791 12/43 (28%)
NHL repeat 692..733 CDD:271324 11/40 (28%)
NHL repeat 742..772 CDD:271324 10/34 (29%)
WD40 repeat 743..767 CDD:293791 9/23 (39%)
trim2bXP_009304581.1 Bbox_SF 28..67 CDD:469587 13/38 (34%)
CC_brat-like 73..193 CDD:475168 17/122 (14%)
IG_FLMN 237..334 CDD:214720 18/98 (18%)
NHL_TRIM2_like 396..669 CDD:271330 82/290 (28%)
NHL repeat 414..453 CDD:271330 5/38 (13%)
NHL repeat 461..500 CDD:271330 13/43 (30%)
NHL repeat 503..540 CDD:271330 16/36 (44%)
NHL repeat 547..588 CDD:271330 14/42 (33%)
NHL repeat 594..636 CDD:271330 15/54 (28%)
NHL repeat 639..665 CDD:271330 9/25 (36%)
Blue background indicates that the domain is not in the aligned region.

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