DRSC/TRiP Functional Genomics Resources

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Protein Alignment wech and trim3b

DIOPT Version :10

Sequence 1:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_001417818.1 Gene:trim3b / 555391 ZFINID:ZDB-GENE-070112-1132 Length:772 Species:Danio rerio


Alignment Length:817 Identity:178/817 - (21%)
Similarity:302/817 - (36%) Gaps:211/817 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 NPKMSP-------------ESSNNSSISCGWCEVSA-----SIRCLECNEFMCN---------DC 145
            |||:.|             ....:.::||..|..::     .:..|:.|.|:.|         :|
Zfish    36 NPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQTSILPEKGVAALQNNFFITNLMEVLQRDSEC 100

  Fly   146 LREHRNSPLSSNHSIVSLPTPIGASPTGGSSVNAQTPPSGNFICDIH-NEMLRYVCDYCRKLVCQ 209
            .|....|.|.|          :.|:..|       .|.|    |..| .:::.:.|:.|...:|.
Zfish   101 SRPEACSVLES----------VSAAAAG-------KPLS----CPNHEGKVMEFYCESCETAMCL 144

  Fly   210 CCTLHEHKEHSYASIQSFMVGSKEKLEGAIESSQVGTRCIKSSIDKALAFIRLIERNCSELSDNI 274
            .||..||:||....::..:...|..|:..:::       |::.:.:..|.|.::.....:|::..
Zfish   145 ECTEGEHREHVTVPLRDVLEQHKAVLKNQLDA-------IRNRLPQLTAAIEMVNEISKQLTERK 202

  Fly   275 RKAFRQFIIAIEDRERFLLDFVEKLRQRRLAILHD-------QMAGLKSALAGLSETSDMLSKVA 332
            .:|..:..:..|:.||       .|.||:.|::.|       :...|::.|:.|.:..:.:    
Zfish   203 NEAVNEINMTFEELER-------ALHQRKAALITDLENICSTKQKVLQAQLSSLLQGKEHI---- 256

  Fly   333 DNACNMDQIEIAMKLTNG--------QRQMEQFAGIYKDLQPKQEVFAFAPPDYSLLQDIRNQGG 389
            .::|:..:    ..|::|        |:||            .:.|.|.|..|:.....      
Zfish   257 QSSCSFTE----QALSHGSATEVLLVQKQM------------SERVSALACHDFPERPH------ 299

  Fly   390 VILVDDKNLPIVSSSNGIVPSVSSVNAVAAASVGVVGGVAGVVGGVGVSNGLDLAFGMNMPNNPL 454
                ::.:|.....:.|:..|:.::..:.         ..|.||...|:.|..|...:...:..:
Zfish   300 ----ENAHLDCQIETEGLRRSIQNLGVLL---------TTGAVGHTSVATGEGLRHALVGQHVTV 351

  Fly   455 SVASSSVRRPLLRDNSFRIPSPIMQPRGG---SACGMSSGMSSAALDWELNG------------- 503
            :|.:......|:|..:..:.:.||...|.   .|..:.:...:..:.:.|.|             
Zfish   352 TVTTKDKDSELVRTGNAALRAEIMGQDGAQVTEAEVVDNKNGTYEVGYTLKGEGEYLFSLILYGQ 416

  Fly   504 -LRSSP-GLHFSAPRTTQAIPGCMDLVK-----------------VRNSNA-------------- 535
             :|.|| .|....|   ..:|...|.||                 ||..::              
Zfish   417 PVRGSPFKLRAIKP---SDVPQSPDDVKRRVKSPSGTGGHIRQKAVRRPSSMYSTTKKKENPIED 478

  Fly   536 -LSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFDL 599
             |.....|.|.|.|:.:...|:.....|.|:|:|..|..:|||..||..|.:||.:|...|:...
Zfish   479 ELIYRVGTRGREKGEFTNLQGISASISGRVIVADSNNQCIQVFTNDGQFKARFGVRGRSPGQLQR 543

  Fly   600 PAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDVAVNSRRQIVVTDSR 664
            |.|:.||.:..:||.|.||..:.||:..|.|..|.|:     |:...|..|||:....|:..|::
Zfish   544 PTGVAVDTNGDVIVADYDNRWISIFSPDGKFKNKIGA-----GRLMGPKGVAVDRNGHIIAVDNK 603

  Fly   665 NHRIQQFDSEGRFI----------RQIV------------FDNHGQTKGIASPRGVCYTPTGNII 707
            ...:..|.|.|:.:          ||..            |...|  .|. ||..|.......|:
Zfish   604 ACCVFIFQSNGKLVTKFGARGTSDRQFAEKSGSKCALEQKFSKSG--PGF-SPHFVAVNNKNEIV 665

  Fly   708 VSDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDDEGRIIVADSKNQRILVFNQNLD 772
            |:||.||.:.:...| .:.|...|..|.|..:||.|:|:..|..|.|||||..|.||.||:....
Zfish   666 VTDFHNHSVKVYSAD-GEFLFKFGSHGEGNGQFNAPTGVAVDVNGNIIVADWGNSRIQVFDSAGS 729

  Fly   773 FMWDIEVRPSINPLMPPTLDEKDRTCDVAIMPDGRIV 809
            |:  ..:..|.:||..|.        .:|:..||.:|
Zfish   730 FL--SYINTSADPLYGPQ--------GLALTSDGHVV 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wechNP_524772.2 Bbox1 123..163 CDD:380815 11/53 (21%)
Bbox2_TRIM66-like 187..228 CDD:380852 11/41 (27%)
CC_brat-like 232..343 CDD:475168 19/117 (16%)
NHL_TRIM71_like 528..810 CDD:271324 94/336 (28%)
NHL repeat 553..592 CDD:271324 14/38 (37%)
NHL repeat 600..639 CDD:271324 15/38 (39%)
WD40 repeat 603..640 CDD:293791 13/36 (36%)
WD40 repeat 647..684 CDD:293791 11/58 (19%)
NHL repeat 647..683 CDD:271324 11/57 (19%)
WD40 repeat 692..736 CDD:293791 13/43 (30%)
NHL repeat 692..733 CDD:271324 12/40 (30%)
NHL repeat 742..772 CDD:271324 14/29 (48%)
WD40 repeat 743..767 CDD:293791 12/23 (52%)
trim3bNP_001417818.1 RING-HC_TRIM3 21..68 CDD:438424 6/31 (19%)
Bbox2_TRIM3_C-VII 115..161 CDD:380883 14/56 (25%)
CC_brat-like 166..285 CDD:467844 24/152 (16%)
IG_FLMN 333..427 CDD:214720 16/93 (17%)
NHL_TRIM2_like 479..772 CDD:271330 90/297 (30%)
NHL repeat 497..536 CDD:271330 14/38 (37%)
NHL repeat 544..583 CDD:271330 16/43 (37%)
NHL repeat 586..623 CDD:271330 9/36 (25%)
NHL repeat 630..691 CDD:271330 15/64 (23%)
NHL repeat 697..739 CDD:271330 18/43 (42%)
NHL repeat 742..768 CDD:271330 5/23 (22%)

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