DRSC/TRiP Functional Genomics Resources

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Protein Alignment wech and Rnf208

DIOPT Version :10

Sequence 1:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_001424717.1 Gene:Rnf208 / 499748 RGDID:1565957 Length:265 Species:Rattus norvegicus


Alignment Length:238 Identity:43/238 - (18%)
Similarity:73/238 - (30%) Gaps:81/238 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 ESFPAWDLNVGLLPNVGQSSPPRA---------DFFINNFLGG-LDT-HGDFSIGPI------GS 103
            |.||.........|...:.:|..|         :..:|...|| :.| .|.....|:      ||
  Rat    39 EKFPELPAATPCFPPAPRPTPTLAPKRAWPSDTEIIVNQACGGDMPTLEGASHTPPLPRRPRKGS 103

  Fly   104 GARSNPKMSP----------------ESSNNSS--------ISCGWCEVSASI-----RCLECNE 139
            .....|:::|                .|:.:||        :.|..|..:.::     |.|.|..
  Rat   104 SELGFPRVAPVDEVIVNQYVIRPGPTASAPSSSGPVIAGEPLECPTCGHTYNVTQRRPRVLSCLH 168

  Fly   140 FMCNDCLRE----------------HRNSPLSSNHSIVSLPTPIGASPTGGSSVNAQTPP----- 183
            .:|..||:.                ||.:.|.:::.:.:|..        .:|:.::.||     
  Rat   169 SVCEQCLQILYESCPKYKFISCPTCHRETVLFTDYGLAALAV--------NTSILSRLPPEALTA 225

  Fly   184 --SGNFICDIHNEMLRYVCDYCRKLVCQCCTLHEHKEHSYASI 224
              .|.:..:......:....||.    ..||.|.....|..||
  Rat   226 PSGGQWGGESEGSCYQTFRQYCG----AACTCHVRNPLSACSI 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wechNP_524772.2 Bbox1 123..163 CDD:380815 11/60 (18%)
Bbox2_TRIM66-like 187..228 CDD:380852 8/38 (21%)
CC_brat-like 232..343 CDD:475168
NHL_TRIM71_like 528..810 CDD:271324
NHL repeat 553..592 CDD:271324
NHL repeat 600..639 CDD:271324
WD40 repeat 603..640 CDD:293791
WD40 repeat 647..684 CDD:293791
NHL repeat 647..683 CDD:271324
WD40 repeat 692..736 CDD:293791
NHL repeat 692..733 CDD:271324
NHL repeat 742..772 CDD:271324
WD40 repeat 743..767 CDD:293791
Rnf208NP_001424717.1 None
Blue background indicates that the domain is not in the aligned region.

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