DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wech and trim2

DIOPT Version :10

Sequence 1:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_001005680.1 Gene:trim2 / 448181 XenbaseID:XB-GENE-942459 Length:760 Species:Xenopus tropicalis


Alignment Length:817 Identity:187/817 - (22%)
Similarity:300/817 - (36%) Gaps:219/817 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 NPKMSPESSNNSSISC--GWCEVSASIRCLE-----------CNEFMCNDCLREHRNSPLSSNHS 159
            |||:.|         |  .:||     |||:           |........|.|...|.|.:|..
 Frog    32 NPKVLP---------CLHTFCE-----RCLQNYIPAHSLTLSCPVCRQTSILPEKGVSALQNNFF 82

  Fly   160 IVSLPTPIGASPTGG----------SSVNAQTPPSGNFICDIHN-EMLRYVCDYCRKLVCQCCTL 213
            |.:|...:..||..|          |:|.|..|.|    |..|: .::.:.|..|...:||.||.
 Frog    83 ITNLMDVLQRSPDNGIEESSILETVSAVAAGKPLS----CPNHDGNVMEFYCQSCETAMCQDCTG 143

  Fly   214 HEHKEHSYASIQSFMVGSKEKLEGAIESSQVGTRCIKSSIDKALAFIRLIERNCSELSDNIRKAF 278
            .||.||....::..:...|..|:..:::.:.....|.|::......:..:....:.:.:.|...|
 Frog   144 GEHAEHPTVPLKDVVEQHKAALQAQLDAVKKRLPEIDSALQCVSEIVNQLASQKTSIVEEIHSTF 208

  Fly   279 RQFIIAIEDRERFLLDFVE-------KLRQRRLAILHDQMAGLKS-------ALAGLSET----- 324
            ......:..|:..||..:|       |:.|.:|..|.:....:||       ||...:||     
 Frog   209 DDLQKTLNVRKSVLLMELEVNYGLKHKVLQAQLDTLIEGQESIKSCTTFTAQALNHGTETEVLLV 273

  Fly   325 ----SDMLSKVADNACNMDQIEIAMKLTNGQRQMEQFAGIYKDLQP-KQEVFAFAPPDYSLLQDI 384
                ||.|:::|:                     :.|     .||| :.:...|......|.:.|
 Frog   274 KKQMSDKLNELAE---------------------QDF-----PLQPHENDQLDFIVETEGLKKSI 312

  Fly   385 RNQGGVILVDDKNLPIVSSSNGIVPSVSSVNAVAAASVGVVGGV-AGVVGGVGVSNGLDLAFGMN 448
            .|.|.::                     :.||||:.:|....|: ..|:|               
 Frog   313 HNLGTIL---------------------TTNAVASETVATGEGLRQSVIG--------------- 341

  Fly   449 MPNNPLSVASSSVRR--PLLRDNSFRIPSPIMQPRG----GSACGMSSG---------------- 491
               .|:||..::..:  .|.:..|..|.:.:..|.|    |......:|                
 Frog   342 ---QPMSVTITTKDKDGELCKTGSAYISAELFTPDGSVTDGEVVDNKNGTYEFSYTIPTEGDFTL 403

  Fly   492 ------------------MSSAALDWELNGLR---SSPG--------------LHFSAPRTTQAI 521
                              :.||.:.....|::   .|||              ::.:..|....|
 Frog   404 SLRLYDQHIKGSPFKLKVVKSADVSPTTEGVKRRVKSPGSGHVKQKAVKRPASMYSTGKRKENPI 468

  Fly   522 PGCMDLV----KVRNSNALSLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFNPDGS 582
            ..  ||:    ..::.:..||: .|:|...|:.:...|:.....|.:|::|..|..||:|:.||.
 Frog   469 ED--DLIFRVGSRKDEDVRSLT-GTKGRNKGEFTNLQGVAASTNGKILIADSNNQCVQIFSNDGQ 530

  Fly   583 LKFKFGRKGVGNGEFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYP 647
            .|.:||.:|...|:...|.|:.|.....||:.|.||..|.||:|.|.|..|.||     |:...|
 Frog   531 FKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSADGKFKTKIGS-----GKLMGP 590

  Fly   648 WDVAVNSRRQIVVTDSRNHRIQQFDSEGRFIRQIVFDNHG----QTKG-IASPRGVCYTPTGNII 707
            ..|:|:....|:|.|::...:..|...|:.:.:  |.:.|    |..| :..|..........||
 Frog   591 KGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTR--FGSRGNGDKQFAGTLDGPHFAAVNSNNEII 653

  Fly   708 VSDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDDEGRIIVADSKNQRILVFNQNLD 772
            |:||.||.:.:.:.|...||.. |..|.|..:||.|:|:..|..|.|||||..|.||.||:.:..
 Frog   654 VTDFHNHSVKVFNQDGEFILKF-GSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDGSGS 717

  Fly   773 FMWDIEVRPSINPLMPPTLDEKDRTCDVAIMPDGRIV 809
            |:  ..:..|.:||..|.        .:::..||.:|
 Frog   718 FL--SYINTSADPLYGPQ--------GLSLTSDGHVV 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wechNP_524772.2 Bbox1 123..163 CDD:380815 13/52 (25%)
Bbox2_TRIM66-like 187..228 CDD:380852 12/41 (29%)
CC_brat-like 232..343 CDD:475168 24/133 (18%)
NHL_TRIM71_like 528..810 CDD:271324 88/291 (30%)
NHL repeat 553..592 CDD:271324 13/38 (34%)
NHL repeat 600..639 CDD:271324 17/38 (45%)
WD40 repeat 603..640 CDD:293791 15/36 (42%)
WD40 repeat 647..684 CDD:293791 8/36 (22%)
NHL repeat 647..683 CDD:271324 8/35 (23%)
WD40 repeat 692..736 CDD:293791 13/43 (30%)
NHL repeat 692..733 CDD:271324 12/40 (30%)
NHL repeat 742..772 CDD:271324 14/29 (48%)
WD40 repeat 743..767 CDD:293791 12/23 (52%)
trim2NP_001005680.1 RAD18 2..>109 CDD:227719 21/90 (23%)
RING-HC_TRIM2 15..65 CDD:438423 11/46 (24%)
Bbox2_TRIM2_C-VII 115..156 CDD:380882 14/44 (32%)
CC_brat-like 161..282 CDD:467844 22/120 (18%)
IG_FLMN 325..421 CDD:214720 15/113 (13%)
NHL_TRIM2_like 483..760 CDD:271330 88/281 (31%)
NHL repeat 501..540 CDD:271330 13/38 (34%)
NHL repeat 548..587 CDD:271330 18/43 (42%)
NHL repeat 590..627 CDD:271330 9/38 (24%)
NHL repeat 634..679 CDD:271330 13/45 (29%)
NHL repeat 685..727 CDD:271330 18/43 (42%)
NHL repeat 730..756 CDD:271330 4/23 (17%)

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