DRSC/TRiP Functional Genomics Resources

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Protein Alignment wech and lin-41

DIOPT Version :10

Sequence 1:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster
Sequence 2:NP_001020998.1 Gene:lin-41 / 172760 WormBaseID:WBGene00003026 Length:1147 Species:Caenorhabditis elegans


Alignment Length:951 Identity:255/951 - (26%)
Similarity:394/951 - (41%) Gaps:231/951 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SNNSV---PQQMASSNAPSANNVAHSSTANGSGGGSVSSNASNSSERL-LAGILES-----FPAW 61
            :|.|:   |..|||.:.|.     ||:|.      :...|:..|:.|| ||..:.|     ||  
 Worm   300 TNTSMHMPPSLMASPDVPK-----HSATI------APPRNSMCSTPRLQLATPMSSQSQQTFP-- 351

  Fly    62 DLNVGLLPNVGQSSPPRADFFINNFLGGLDTHGDFSIGPIGSGARSNPKMSPESSNNSSISCGWC 126
                  :|:                             |:||..:....|.|       |.|..|
 Worm   352 ------IPS-----------------------------PLGSQPQQQQPMGP-------IQCQGC 374

  Fly   127 EVSASIR-CLECNEFMCNDCLREHRNSPLSSNHSIVSL--------------------PTPIGAS 170
            |...|.. |::|.|.:|..|::.|:....:..|:.|.|                    ...:|.|
 Worm   375 ESKISFAYCMQCQEALCIHCVQAHQRVRATKQHAFVELQQLMATLMSRAVQPQQAQQYTQNVGGS 439

  Fly   171 ------PTGGSSV---------------NAQTPPSGNFICDIHNEMLRYVCDYC--RKLVCQCCT 212
                  ..|...|               :.::.|..:.:|..|:.::..:|:.|  ..|:|..|.
 Worm   440 VRQALGSVGSGDVFFSGHVSGVENDSIGSGESSPRSSSVCGTHDSVIIGICENCPHSVLLCAICV 504

  Fly   213 LHEHKEHSYASIQSFMVGSKEKLEGAIESSQVGTRCIKSSIDKALAFIRLIERNCSELSDNIRKA 277
            .....:|....:....|...|.:.   ||..:..:|.|:. |.....|..|..|.:...:.||.|
 Worm   505 AQHPGKHRVQPLGDIRVAVGEVVN---ESQLLQWQCEKTG-DTIKQIIDGIVTNATTAENEIRAA 565

  Fly   278 FRQFIIAIEDRERFLLDFVEKLRQRRLAILHDQMAGLKSALAGLSETSDMLSKVADNACNMDQI- 341
            |...:.|:|:|.:.||..||.::..:|::|..|...|:|....|.:.....:|:.|:: :.|:: 
 Worm   566 FDTHVNALEERRKELLKRVETVKNLKLSVLISQAESLQSKQIDLQQAIQTATKLMDSS-DCDEMV 629

  Fly   342 --EIAMKLTNGQRQMEQFAGIYKDLQPKQEVFAF----------------APPDYSLLQDIRNQG 388
              ::..||.:.|...|       ..:|...:...                ||.|..||...|..|
 Worm   630 LRQVFEKLASCQMGNE-------GTEPNNNILNVLMLACQVNEDDRLKFTAPQDGILLNKARQFG 687

  Fly   389 GVILVDDKNLPIVSSSNGIVPSVSSVNAVAAASVGVVGGVAGVVGGVGVSNGLDLAFGMNMPNNP 453
            .:     ::.|...:|:  :...|...|:......:...:....|        ||.........|
 Worm   688 NI-----ESGPCAKNSS--IVGDSFKKAIRERQTVIYVQLRDACG--------DLLSSSIAATQP 737

  Fly   454 LSVA----------------SSSVRRPLLRDNSFRIPSPIMQPRGGSACGMSSGMSSAALDWELN 502
            .|.|                :|.|:..::..:...: ...|.||......:|. ..|....:.||
 Worm   738 TSQALLPHQEPHSHLEQAMPTSDVQAFVISPDGSTV-EVTMTPRENGIVALSY-YPSIEGSYTLN 800

  Fly   503 GL-RSSPGLHFSAPRTTQAIPGC---MDLVKVRNSNALS-----LSFATEGHEDGQVSRPWGLCV 558
            .| :.:|            |.||   ||:.:.||.:.::     |:|..||..||::.||||:||
 Worm   801 ILVKGTP------------ISGCPTTMDIRRGRNYDEIAAKGPILTFGKEGSGDGELCRPWGICV 853

  Fly   559 DKMGHVLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFDLPAGICVDVDNRIIVVDKDNHRVQI 623
            |:.|.|:|:||.|||||:|:.||:...|||..|...|:||.||||..:..|.|:|.||||||||:
 Worm   854 DQRGRVIVADRSNNRVQIFDKDGNFISKFGTSGNRPGQFDRPAGITTNSLNNIVVADKDNHRVQV 918

  Fly   624 FTASGVFLLKFGSYGKEYGQFQYPWDVAVNSRRQIVVTDSRNHRIQQFDSEGRFIRQIVFDNHGQ 688
            |..:|:||||||..|:..|.|.|||.||.||...|.|:|:||||:|.|..:|:|:|:..||:...
 Worm   919 FDENGMFLLKFGDRGRAVGYFNYPWGVATNSHNAIAVSDTRNHRVQIFTPQGQFVRKCGFDSAYF 983

  Fly   689 TKGIASPRGVCYTPTGNIIVSDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDDEGR 753
            .|.:.||||:||.|.|.::::||:||.|.::.|.....:.|.|.||.|...|.||.|:..|.||.
 Worm   984 FKNLDSPRGLCYLPDGQLLITDFNNHRLAVLSPRNMSEMKVYGSEGDGDGMFVRPQGVVIDPEGH 1048

  Fly   754 IIVADSKNQRILVF-NQNLDFMWDIEVRPSIN------------------------------PLM 787
            |:|.||:|.|:.|| :.::.|:....:.|..|                              ||.
 Worm  1049 ILVCDSRNNRVQVFASDDMRFIGSFGLGPVPNSGFQMPQELPAPYSSLGGPFGAPAFSSAPTPLT 1113

  Fly   788 PPTLDEKDRTCDVAIMPDGRIVFLIELSPDSKEGSNPYKRF 828
            |......||..|:|:.||||| ::::.      |:|..:.|
 Worm  1114 PSPRQLLDRPTDLAVGPDGRI-YVVDF------GNNCIRVF 1147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wechNP_524772.2 Bbox1 123..163 CDD:380815 12/40 (30%)
Bbox2_TRIM66-like 187..228 CDD:380852 8/42 (19%)
CC_brat-like 232..343 CDD:475168 29/113 (26%)
NHL_TRIM71_like 528..810 CDD:271324 132/317 (42%)
NHL repeat 553..592 CDD:271324 22/38 (58%)
NHL repeat 600..639 CDD:271324 23/38 (61%)
WD40 repeat 603..640 CDD:293791 21/36 (58%)
WD40 repeat 647..684 CDD:293791 18/36 (50%)
NHL repeat 647..683 CDD:271324 18/35 (51%)
WD40 repeat 692..736 CDD:293791 18/43 (42%)
NHL repeat 692..733 CDD:271324 16/40 (40%)
NHL repeat 742..772 CDD:271324 14/30 (47%)
WD40 repeat 743..767 CDD:293791 11/23 (48%)
lin-41NP_001020998.1 Bbox_SF 370..412 CDD:469587 12/41 (29%)
BBOX 478..516 CDD:197662 8/37 (22%)
BBC 519..645 CDD:128778 33/130 (25%)
IG_FLMN <760..812 CDD:214720 12/65 (18%)
NHL_TRIM71_like 823..1147 CDD:271324 132/330 (40%)
NHL repeat 848..887 CDD:271324 22/38 (58%)
NHL repeat 895..934 CDD:271324 23/38 (61%)
NHL repeat 942..978 CDD:271324 18/35 (51%)
NHL repeat 987..1028 CDD:271324 16/40 (40%)
NHL repeat 1037..1067 CDD:271324 14/29 (48%)
NHL repeat 1121..1147 CDD:271324 11/32 (34%)

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