DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wech and trim71

DIOPT Version :10

Sequence 1:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster
Sequence 2:XP_004915429.1 Gene:trim71 / 100486898 XenbaseID:XB-GENE-6035039 Length:853 Species:Xenopus tropicalis


Alignment Length:881 Identity:274/881 - (31%)
Similarity:398/881 - (45%) Gaps:152/881 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ASSNAPSANNVAHSSTANGSGGGSVSSNASNSSERL-LAGILESF-------------------P 59
            :||::.|::.|:.||::.||.||. :..||....|| :...|.:|                   |
 Frog    27 SSSSSSSSSQVSTSSSSAGSAGGG-TGLASAPPRRLHVLPCLHAFCRQCLEGRRSPGDSLQLRCP 90

  Fly    60 AWDLNVGLLPNVGQSSPPRADFF-INNFLGGLDTHGDFSIGPIGSGARSNPKMSPESSNN----- 118
            ..|..| |:...|..:.|.:.|. ::|.|..:....|......|....||.:.|...|::     
 Frog    91 VCDHKV-LISEAGMDALPSSTFLHLSNLLDAVVGAADEQQQSNGGRTASNRQRSASCSSSGLLRR 154

  Fly   119 -----SSISCGWCE--VSASIRCLECNEFMCNDCLREHRNSPLSSNHSIVSLPTPIGASPTGGSS 176
                 |...|..|:  ..||..||:|.|.:|::|||.|:...|:.:|.|...|    |||...::
 Frog   155 APPSQSEPRCSSCDDGNGASSHCLDCQENLCDNCLRAHQRVRLTKDHFIERFP----ASPCSSAA 215

  Fly   177 VNAQTPPSGN-------------FICDIHNE-----------------------MLRYVCDYCRK 205
            .:|.|..|.:             ..|..|:|                       :|.:.||.|..
 Frog   216 SSAATTSSSSSSAFSLLPVYPERLYCQQHDEEIYKFGIRKRVYTLADLVRIKDWVLHFYCDSCSV 280

  Fly   206 LVCQCCTLHEHKEHSYASIQSFMVGSKEKLEGAIESSQVGTRCIKSSIDKALAFIRLIERNCSEL 270
            .:|:.||:..|..||:..:|..:..|:......:..:|.|.:.|:.|:::|.|....:|.....:
 Frog   281 PICRECTMGRHAGHSFVYLQEALQDSRALTIQLLADAQQGRQAIQLSLEQAQALAEQVEMKAKVV 345

  Fly   271 SDNIRKAFRQFIIAIEDRERFLLDFVEKLRQRRLAILHDQMAGLKSALAGLSETSDMLSKVADNA 335
            ...|:....:...|:|:||..||..|||:||.:...|:.|:..|..||..|..|.:.:.:|.:..
 Frog   346 QSEIKAVTSRHKKALEERECELLWKVEKIRQVKAKSLYHQVEKLHQALNKLDSTINAVQQVLEEG 410

  Fly   336 CNMDQIEIAMKLTNGQRQMEQFAGIYKDLQPKQEVFAFAPPDYSLLQDIRNQGGVILVDDKNLPI 400
            |.|| |.||......|.|..:.|.....||....:. |.|||.:|...|::.|   ||.......
 Frog   411 CTMD-ILIARDRVLAQVQDVKNARGLLQLQEDDRIM-FTPPDQALYLAIKSLG---LVSSGAFAA 470

  Fly   401 VSSSNGIVPSVSSVNAVAAASVGVVG----GVAGVVGGVGVSNGLDLAFGMNMPNNPLSVASSSV 461
            ::.:.|  ..:........||..|:|    |.|.:.||       ||                  
 Frog   471 LTKATG--EGLKRALQGKVASFTVIGYDHDGEARLSGG-------DL------------------ 508

  Fly   462 RRPLLRDNSFRIPSPIMQPRGGSACGMSSGMSSAALDWELNG---LRSSPGLH----FSAPRTTQ 519
                       |...:|.|.|        .:.:|.:..:|||   :...|.|.    .|.....|
 Frog   509 -----------ITVLVMGPDG--------NLFAAEVSDQLNGTYLVSYRPQLEGEHLISVMVCNQ 554

  Fly   520 AIPGCMDLVKVRNSNAL------SLSFATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQVFN 578
            .|......|.|::....      :|||..||..||::.||||:|||:.|:::|:||.|||||:|.
 Frog   555 HIENSPFKVNVKSGRCYLGIGLPTLSFGGEGDHDGKLCRPWGVCVDREGYIIVADRSNNRVQIFK 619

  Fly   579 PDGSLKFKFGRKGVGNGEFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQ 643
            |.|:...|||..|...|:||.|||:..|...||:|.|||||||||||..|.||||||..|.:.||
 Frog   620 PCGTFHHKFGSLGSRPGQFDRPAGVACDNSRRIVVADKDNHRVQIFTFEGQFLLKFGEKGTKNGQ 684

  Fly   644 FQYPWDVAVNSRRQIVVTDSRNHRIQQFDSEGRFIRQIVFDNHGQTKGIASPRGVCYTPTGNIIV 708
            |.|||||||||..:|:|:|:||||:|.|..:|.|:.:..|:. ...|...|||||.::..|.::|
 Frog   685 FNYPWDVAVNSEGKILVSDTRNHRVQLFGPDGTFLNKYGFEG-ALWKHFDSPRGVAFSQDGYLVV 748

  Fly   709 SDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDDEGRIIVADSKNQRILVFNQNLDF 773
            :||:||.|.:|.||... ....|.||:|..:|.||.|:..|.|||||||||:|.|:.:|..|..|
 Frog   749 TDFNNHRLLIIKPDCQS-AHFLGTEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPNGSF 812

  Fly   774 MWDIEVRPSINPLMPPTLDEKDRTCDVAIMPDGRIV 809
            :.....:.|       ...:.||...:|:.|||.||
 Frog   813 LCKFGTQGS-------GFGQMDRPSGIAVTPDGTIV 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wechNP_524772.2 Bbox1 123..163 CDD:380815 16/41 (39%)
Bbox2_TRIM66-like 187..228 CDD:380852 14/63 (22%)
CC_brat-like 232..343 CDD:475168 31/110 (28%)
NHL_TRIM71_like 528..810 CDD:271324 133/288 (46%)
NHL repeat 553..592 CDD:271324 21/38 (55%)
NHL repeat 600..639 CDD:271324 25/38 (66%)
WD40 repeat 603..640 CDD:293791 23/36 (64%)
WD40 repeat 647..684 CDD:293791 19/36 (53%)
NHL repeat 647..683 CDD:271324 19/35 (54%)
WD40 repeat 692..736 CDD:293791 18/43 (42%)
NHL repeat 692..733 CDD:271324 16/40 (40%)
NHL repeat 742..772 CDD:271324 17/29 (59%)
WD40 repeat 743..767 CDD:293791 14/23 (61%)
trim71XP_004915429.1 RING-HC_TRIM71_C-VII 1..100 CDD:438251 20/74 (27%)
Bbox1_TRIM71_C-VII 163..206 CDD:380870 16/42 (38%)
Bbox2_TRIM71_C-VII 240..307 CDD:380854 14/66 (21%)
CC_brat-like 312..427 CDD:475168 34/115 (30%)
Filamin 467..562 CDD:395505 24/140 (17%)
NHL_TRIM71_like 569..853 CDD:271324 131/282 (46%)
NHL repeat 594..633 CDD:271324 21/38 (55%)
NHL repeat 641..680 CDD:271324 25/38 (66%)
NHL repeat 688..724 CDD:271324 19/35 (54%)
WD40 repeat 689..725 CDD:293791 18/35 (51%)
NHL repeat 732..772 CDD:271324 16/40 (40%)
NHL repeat 781..811 CDD:271324 17/29 (59%)
NHL repeat 827..853 CDD:271324 8/15 (53%)

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