DRSC/TRiP Functional Genomics Resources

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Protein Alignment Apc and pkp3b

DIOPT Version :9

Sequence 1:NP_001263046.1 Gene:Apc / 44642 FlyBaseID:FBgn0015589 Length:2417 Species:Drosophila melanogaster
Sequence 2:XP_002662884.1 Gene:pkp3b / 100330353 ZFINID:ZDB-GENE-130530-870 Length:791 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ApcNP_001263046.1 ARM 222..316 CDD:237987
armadillo repeat 258..332 CDD:293788
ARM 332..448 CDD:237987
armadillo repeat 369..403 CDD:293788
armadillo repeat 411..448 CDD:293788
armadillo repeat 498..539 CDD:293788
ARM 506..624 CDD:237987
armadillo repeat 548..582 CDD:293788
armadillo repeat 590..624 CDD:293788
APC_crr 837..860 CDD:283553
APC_crr 903..927 CDD:283553
APC_crr 1066..1090 CDD:283553
APC_crr 1247..1271 CDD:283553
pkp3bXP_002662884.1 ARM 320..427 CDD:237987
armadillo repeat 349..385 CDD:293788
armadillo repeat 391..425 CDD:293788
armadillo repeat 446..480 CDD:293788
ARM 641..768 CDD:237987
armadillo repeat 641..673 CDD:293788
armadillo repeat 680..721 CDD:293788
armadillo repeat 727..766 CDD:293788
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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