DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ag5r and vap-2

DIOPT Version :10

Sequence 1:NP_524770.1 Gene:Ag5r / 44631 FlyBaseID:FBgn0015010 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_001300377.1 Gene:vap-2 / 181273 WormBaseID:WBGene00011462 Length:507 Species:Caenorhabditis elegans


Alignment Length:248 Identity:58/248 - (23%)
Similarity:90/248 - (36%) Gaps:64/248 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GIASATDYCKKSCGSTKNLGCDNNGAWASSCPSDATLLTLSSAEKDALVARTNEYRNHIAGGL-- 77
            |:..|....|...||.:   |||      |..||.|        ::..:.:.|.||:.:|.|.  
 Worm   289 GLCQAPSMVKDDGGSFQ---CDN------SLVSDVT--------RNFTLEQHNFYRSRLAKGFEW 336

  Fly    78 ----NANLSAACRMATIKWNDELAYLASLNVKSCQMKHDGCHNTDAFDWSGQNLAWMGYYNPLNV 138
                |.:...|.:|..::::..|...|.....:|...|...:....   .||||....:.|| :.
 Worm   337 NGETNTSQPKASQMIKMEYDCMLERFAQNWANNCVFAHSAHYERPN---QGQNLYMSSFSNP-DP 397

  Fly   139 THYLEWGVDMWYDEA---------VYTKQAYIDAYPSNYNGPAIGHFTVLVADRNTEVGCAAATY 194
            ...:...|:.|:.|.         |.|.:.:      :..|.||||:|.:..||...:||..|  
 Worm   398 RSLIHTAVEKWWQELEEFGTPIDNVLTPELW------DLKGKAIGHYTQMAWDRTYRLGCGIA-- 454

  Fly   195 SVSGQSYKAFLLACNYA-ATNVLGIKMY---------------SSCSKAASKC 231
            :....||    :.|:|. |.|....|:|               :.|.|..|.|
 Worm   455 NCPKMSY----VVCHYGPAGNRKNNKIYEIGDPCEVDDDCPIGTDCEKTTSLC 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ag5rNP_524770.1 CAP_euk 59..211 CDD:349399 37/166 (22%)
vap-2NP_001300377.1 SCP 104..253 CDD:214553
SCP 315..468 CDD:214553 39/176 (22%)
Blue background indicates that the domain is not in the aligned region.

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