DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and SDG38

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_196280.2 Gene:SDG38 / 830550 AraportID:AT5G06620 Length:325 Species:Arabidopsis thaliana


Alignment Length:353 Identity:72/353 - (20%)
Similarity:116/353 - (32%) Gaps:138/353 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 TASACSSKSKNLK-NPAP-----------------QIKRGQRILTEKPFAFVLKSQYRLERCDNC 63
            ::||.|::..:.: .|.|                 :|..|..|.|.||          :..|.:.
plant    26 SSSAASNRDGDYQIGPPPIRVGLTESAGRAVFATRKIGAGDLIHTAKP----------VVACPSL 80

  Fly    64 LEATKVLKCSNC------------RYVSYCHRSCQMQA-----------WGQHKHECPFLKKVHP 105
            |:...|  |..|            |.||||.:.||..:           |......|    :.|.
plant    81 LKLDSV--CYLCLKKLMGSAKFEDRGVSYCSQECQENSKGFLDVETRADWSSFDDYC----RTHN 139

  Fly   106 RVVPDAARMLCRLIL-----------------------RLEHGGDLIRGYYTEHGSRKFRDLMSH 147
            ...|...:.||.:|:                       ::|.|..|:...:     ||       
plant   140 FKYPLMVKRLCCMIISGARPADCLDILQPAVLSSEMISKIEDGYGLLWNAF-----RK------- 192

  Fly   148 YAEIKNDPMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLITNGFNI------------- 199
             |..|:|.:         |.||            |....:|..|:..|.|.|             
plant   193 -ANFKDDDV---------AFLT------------KQWYTAILARIRINAFRIDLVGGSCGEDLLS 235

  Fly   200 -----LDAEMNSIATAIYLGVSITDHSCQPNA-VATFEGNELHVHAIEDMECLDWSKIFISYIDL 258
                 ::.| .::..|:|:..|..:|.|.||| :......:..::.:.|:|  :..::.|.|||.
plant   236 LAAASVEGE-GAVGHAVYMLPSFYNHDCDPNAHIIWLHNADARLNTLRDVE--EGEELRICYIDA 297

  Fly   259 LNTPEQRRLDLKEHYYFLCVCSKC--TD 284
            ....|.|:..|.:.:.|||.|.:|  ||
plant   298 SMGYEARQTILSQGFGFLCNCLRCQSTD 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 13/59 (22%)
TPR_12 377..440 CDD:290160
SDG38NP_196280.2 SET <256..294 CDD:279228 9/39 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000637
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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