DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smyd3 and smyd3

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_073783521.1 Gene:smyd3 / 569507 ZFINID:ZDB-GENE-051120-138 Length:483 Species:Danio rerio


Alignment Length:498 Identity:125/498 - (25%)
Similarity:213/498 - (42%) Gaps:107/498 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 QIKRGQRILTEKPFAFVLKSQYRLERCDNCLEATKVL-KCSNCRYVSYCHRSCQMQAWGQHKHEC 97
            :||.|:.|.:.|||||.:...:....|.:||:..:.| :||.|:...||...||.|||..||.||
Zfish    24 EIKPGEVIYSCKPFAFCVARDFLKTACQSCLKRGESLSRCSQCKTARYCSVQCQKQAWPDHKREC 88

  Fly    98 PFLKKVHPRVVPDAARMLCRLILRL--EHGGDLIRGY-YTEHGSRKFRDLMSHYAEIKNDPMRLE 159
            ..||.:.||:..|:.|::.|:|.:|  :...|....| ..||        .||.|::..:  :.|
Zfish    89 KCLKHLQPRIPTDSVRLVARIIFKLLSQSESDQEELYSIAEH--------QSHLADMSEE--KKE 143

  Fly   160 HLDSLHAVLTDMMAESP---STVPNKTELMSIYGRLITNGFNILDAEMNSIATAIY--------- 212
            .|..|...|...:||..   |.:|:..:.:|:..|:..|.|:|.|.|:..:...:|         
Zfish   144 GLKHLCTTLQVYLAEENCDLSRLPSGLDPVSLLARVTCNCFSISDGELQDVGVGLYPRNMFSTIM 208

  Fly   213 ---------------------------------------------LGVSITDHSCQPNAVATFEG 232
                                                         .|:|:.:|.||||.:..|||
Zfish   209 LQDRAECVSLSPGRGWLCLTAQILHTSTGINRKLLENKSYAGVTMHGMSLLNHDCQPNCIMMFEG 273

  Fly   233 NELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCP 297
            ..|.:.|:..:...:  ::.|||.|:|...:.||..|:|.|:|.|.|.:|:...:..|||:.   
Zfish   274 KRLTLRAVRVIRSAE--ELTISYTDILAPSKDRRSQLQEQYHFRCECKRCSTEDKDCEMLSG--- 333

  Fly   298 NRNCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLD----VCKVCLDKQT 358
                              :......::::.        |:||.::...:.|    ..:..|.:.:
Zfish   334 ------------------EKSAWTSIKDSI--------HHLEQLQSEQHWDELLKESQALLHRHS 372

  Fly   359 GVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLLHMKLGKIQLY 423
            .|....|::.::.||.|.:|.|.:..:..||:||.|.|..::.|....:|...:..:::||:|.:
Zfish   373 DVVPDRNIYMLRLLDLAMDACISLDDYETALEYGNRALGPYKLYFSDPHPSRAVELLRVGKLQHF 437

  Fly   424 EGHSKEALHHLEEAQRILTVTHGRDHRLLTEQLYMLVLQARQE 466
            .|..:||.....:|..|::||||..| .||.|:...:.:.:.|
Zfish   438 LGRLEEARGSFTQAYSIMSVTHGAAH-ALTNQVQRRLSECQAE 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 85/310 (27%)
zf-MYND 60..97 CDD:460312 16/37 (43%)
TPR_12 <383..441 CDD:315987 15/57 (26%)
smyd3XP_073783521.1 None

Return to query results.
Submit another query.