DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smyd3 and smyd5

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001004614.2 Gene:smyd5 / 447875 ZFINID:ZDB-GENE-040912-39 Length:415 Species:Danio rerio


Alignment Length:393 Identity:90/393 - (22%)
Similarity:132/393 - (33%) Gaps:134/393 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SATASAC-------SSKSKNL--KNPAPQIKRGQRILTEKPFA---FVLKSQYRLERCDNCLEAT 67
            ||.||.|       :.|.|.|  |.|   .|:|..|..|:|..   |:..:.|:...|:.||.|.
Zfish    15 SAKASNCVDVRFINNVKGKGLFAKKP---FKKGDTIFIERPLVSSQFLWNALYKYRACEYCLRAL 76

  Fly    68 KVLK-----------------------------CSNCRYVSYCHRSCQMQAWGQ-HKHEC----- 97
            :..:                             |..|: |.||...|:..|..| ||..|     
Zfish    77 ETAEENARRLSGLPALILPHPELCKVRPDRHQACPQCQ-VMYCSSECRQAAMDQYHKILCLGPSN 140

  Fly    98 -----PFLK------KVHPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAEI 151
                 |..|      .||......:..:|.:::..::...|      .|...|.|.:..|..|  
Zfish   141 DDPDHPVNKLQDAWRSVHFPPETSSVMILAKMVATIKQTQD------KERWQRLFTNFCSRTA-- 197

  Fly   152 KNDPMRLEH----------LDSLHAVLTDMMAESP----STVPNKTELMSIYGRLITNGFNI--- 199
             |:...:.|          |..|..:.|..:.|..    .|......|.|:.|   |||..|   
Zfish   198 -NEEEEIVHKLLGEKFQGQLGLLRNLFTTALYEDRLSQWFTPEGFRSLFSLVG---TNGQGIGTS 258

  Fly   200 --------------------------------LDAE----MNSIATAIYLGVSITDHSCQPNAVA 228
                                            :|.|    :|...:.::|..|..:|||.|||.|
Zfish   259 SLSQWVHACDALELPRQQREQLDAFIDQLYKDIDKETGDFLNCEGSGLFLLQSSCNHSCVPNAEA 323

  Fly   229 TFEGNE--LHVHAIEDMECLDWSKIFISYIDLL---NTPEQRRLDLKEHYYFLCVCSKCTDAKES 288
            :|..|.  ||:.|:.|:.  ...:|.|||:|..   .:...|...|:|:|.|:|.|.||....:.
Zfish   324 SFPENNFLLHLTALGDIG--PGEEICISYLDCCQRDRSRHSRHKILRENYLFICSCQKCLSQMDD 386

  Fly   289 KEM 291
            .:|
Zfish   387 ADM 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 14/66 (21%)
TPR_12 377..440 CDD:290160
smyd5NP_001004614.2 zf-MYND 100..135 CDD:280009 10/35 (29%)
SET <293..350 CDD:214614 19/58 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.