DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and SmydA-2

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster


Alignment Length:332 Identity:80/332 - (24%)
Similarity:123/332 - (37%) Gaps:87/332 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 IKRGQRILTEKPFAFVLKSQYRLERCDNCLEATKVL-----------KCSNCRYVSYCHRSCQMQ 88
            ||.|::||.|.|.....|    :.....||...:.|           |||:|.: ..|.:.|:..
  Fly    67 IKIGEQILKEAPLVLGPK----VASAPLCLGCHRNLLAPGKPRGNYHKCSSCSW-PLCGKECEDS 126

  Fly    89 AWGQHKHECP------FLKKVHPRVVP------DAARMLCRLILRLEHGGDLIRGYYTEHGSRKF 141
            .  .||.||.      |..|::  .||      ::|..:. ::||..|..|.....:.     |.
  Fly   127 V--HHKAECQLMSGSNFQSKIN--YVPGEEERKESAYCVI-MLLRCMHLKDKDPDAFL-----KL 181

  Fly   142 RDLMSHYAEIKNDPMRLEHLDSLHAVLTDMMAESPSTVPN-----KTELMSIYGRLITNGFNILD 201
            .:|..|..|      |||  ..|:.||...:.....||..     :.:::.|...|.||.|.:..
  Fly   182 YNLEDHLKE------RLE--TPLYQVLRANLITFIKTVLGMKDWPEMDILRIAAILDTNTFEVRQ 238

  Fly   202 AEMNSIATAIYLGVSITDHSCQPNAVATFEGNELHVHAIEDMECLDWSK--------IFISYIDL 258
            ........|:|.|.::..|.|.||....|:         :||..:..:|        :.|||...
  Fly   239 PRERRKIRALYPGAAMISHDCVPNMRHRFD---------DDMNIVFLAKRKIAKGEILSISYTQP 294

  Fly   259 LNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCPNRNCGAGISVDRNNCPRCDAG----I 319
            |.:..|||:.|::...|.|.|::|.|.:|               .|.......|.:|.||    :
  Fly   295 LRSTIQRRVHLRQAKCFDCSCARCQDPEE---------------LGSFAGAQTCLKCKAGKIISL 344

  Fly   320 SPKLRNA 326
            :|.|.:|
  Fly   345 NPLLNSA 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 11/47 (23%)
TPR_12 377..440 CDD:290160
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:280009
SET <246..291 CDD:214614 12/53 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4564
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.770

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