DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and Smyd4-2

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster


Alignment Length:387 Identity:87/387 - (22%)
Similarity:143/387 - (36%) Gaps:99/387 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 IKRGQRILTEKPFAFVLKSQYRLERCDNCLEATKV-LKCSNCRYVSYCHRSCQMQAWGQ-HKHEC 97
            ::.|..:|.|:|.|..|:..|....|.:|.:.... :.|.:|..:::|...|..:|... |:.||
  Fly   274 LRTGDVLLFEEPVAACLEPSYFGTHCHHCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFEC 338

  Fly    98 PFLKKVHPRVVPDAARMLCRLILRL-EHGGDLIRGYYTEHGSRKFRDLMSHYAEIKNDPMRLEHL 161
            .::    ..::.....:||.:.||: .....|.:|..|  .:..|..|.||..:.:.|       
  Fly   339 EYM----DLMIGSGMSILCFIALRIFTQAPSLEQGLAT--ANLLFEHLCSHEEDRQPD------- 390

  Fly   162 DSLHAVLTDMMAESPSTVPNKTELMSIY-GRLITNGFNILDAEMNSIATA--------------- 210
            |.|...|   |:.....:..|    |:| ||..|.|.|....|: .:|||               
  Fly   391 DYLRRAL---MSGFLLRILQK----SLYFGRRKTEGVNPTAVEL-QVATALLGLLQVLQYNAHQI 447

  Fly   211 ----------------IYLGV------SITDHSCQPNAVATFEGNEL-----HVHAIEDMECLDW 248
                            :||..      |..:|.|.|:....|.|.:|     ..|...::..:::
  Fly   448 YQTQVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATRPHRANELVAVNY 512

  Fly   249 SKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAAL-------CPNRNCGAGIS 306
            ..|||.     |..::|:..|:..|.|.|.|..|   :|:..:|..|       |.:.||...:.
  Fly   513 GPIFIK-----NNLKERQRSLRGRYSFSCSCMAC---QENWPLLQKLDKQVRFWCTSANCSNLLK 569

  Fly   307 VDRN-----NCPRCDAGIS--------PKLRNAFNEAMTLTRHNLENMKDVAYLDVCKVCLD 355
            ..::     .||||...||        .|:...:.||    ...:|..|.|..:::.|..||
  Fly   570 FPKDLAKDVRCPRCRKNISLKESVAKMIKIEELYREA----ARAMEAQKTVEAIELFKESLD 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 66/294 (22%)
zf-MYND 60..97 CDD:460312 8/38 (21%)
TPR_12 <383..441 CDD:315987
Smyd4-2NP_648574.1 BepA 87..205 CDD:443813
SET_SMYD4 249..541 CDD:380934 65/292 (22%)
zf-MYND 299..338 CDD:460312 8/38 (21%)
Blue background indicates that the domain is not in the aligned region.

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