DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and SmydA-6

DIOPT Version :10

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster


Alignment Length:371 Identity:89/371 - (23%)
Similarity:137/371 - (36%) Gaps:81/371 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SATTSATASACSSKSKN--------LKNPAPQIKRGQRILTEKPFAFV-LKSQYRLERCDNCLEA 66
            :|.|...|..|..|..:        |.|    ::.|:.:|.|.|...: |..:.|..:|.|..|:
  Fly     2 AAVTDDFARKCEIKQNDTLGRFAVALCN----VRAGETLLLENPIVVLPLMGERRCSKCFNLTES 62

  Fly    67 TKVLKCSNCRYVSYC-------HRSCQMQAWGQHKHECPF--------LKKVHPRVVPDAARMLC 116
            .    |..||.::.|       .|.|:..|      |..|        .||.|..:.|    :|.
  Fly    63 F----CRKCRLLALCEDCSDHDERDCKRLA------EMNFSDDQVELLQKKEHTEIQP----VLK 113

  Fly   117 RLILRLEHGGDLIRGYYTEHG-------SRKFRDLMSHYAEIKNDPMRLEHLDSLHAVLTDMMAE 174
            .|:|| ||...|  ..|.|..       :|:..::..:|.|....|:      ....||..:...
  Fly   114 CLLLR-EHEETL--PLYEEMSQMDSQLMTRRGTEVWKNYQEHAFTPL------DYGGVLAQLRGA 169

  Fly   175 SPSTVPNKTELMSIYGRLITNGFNILDAEMNSIATAIYLGVSITDHSCQPNAVATFEGNE-LHVH 238
            :...:     :..:.|.|..|.:.|...|:......:|....:..|||.||.|.:.:..: :.|:
  Fly   170 ADEDL-----VQGLLGILDINAYEIRAPEVGGAMRGLYRRAGLFAHSCTPNLVISIDDEQRIKVY 229

  Fly   239 A---IEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKE-SKEMLAALCPNR 299
            |   |...|.|     :..|.::|...|:||..||....|.|.|.:|.|..| ...|.:.:|...
  Fly   230 ANRFIAAGEIL-----YNCYTNVLLGTEERRKILKVGKCFDCSCPRCQDPTELGTHMSSFICSQC 289

  Fly   300 NCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVA 345
            :|..|..|.:.     |.||...|   .|...||.:..:.||.:.|
  Fly   290 SCVDGYIVRQP-----DTGIWQCL---LNPEHTLKQEFVSNMLERA 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 SET 34..284 CDD:394802 65/276 (24%)
zf-MYND 60..97 CDD:460312 10/43 (23%)
TPR_12 <383..441 CDD:315987
SmydA-6NP_611182.1 SET_SMYD <185..271 CDD:380997 25/90 (28%)
Blue background indicates that the domain is not in the aligned region.

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