DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and SmydA-7

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001261039.1 Gene:SmydA-7 / 36916 FlyBaseID:FBgn0034182 Length:488 Species:Drosophila melanogaster


Alignment Length:485 Identity:112/485 - (23%)
Similarity:175/485 - (36%) Gaps:137/485 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 IKRGQRILTEKPFAFVLKSQYRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWGQH-KHECP 98
            |:.|..||.|:|.......:....:|..||:.:.|: |..|:....| ..|     .|| :.||.
  Fly    26 IEPGDTILEERPLLVAPHWECHQLKCAQCLQESYVI-CRRCQVFPLC-MDC-----NQHDEFECE 83

  Fly    99 FLKKVHPRVVPDAARMLC--------------RLILRLEH---GGD---LI------------RG 131
            |.       ...|.:.||              :|:|.||:   .||   ||            .|
  Fly    84 FF-------TSGAGKALCKDILVKNFGICGLLKLLLLLENPRTKGDCQMLIDVPINLSDYRDGEG 141

  Fly   132 YYTEHGSRKFRDLM-SHYAEIKNDPMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLITN 195
            .:.||.....|.|| |..|::.  |.:....|:|||...                     |:.:|
  Fly   142 MWQEHEELVVRPLMESGLADVL--PTQELTSDALHAHCI---------------------RIDSN 183

  Fly   196 GFNILDAEMNSIATAIYLGVSITDHSCQPN-AVATFEGNELHVHAIEDMECLDWSKIFISYIDLL 259
            .|.:...:.:::......|.:: .|.|.|| .||..|...:.::|...::..|  .|:.||.:.|
  Fly   184 SFEVTAKDGDTLKGIFVWGATL-PHHCVPNTVVALDEQFNMKLYAAVPLQPGD--IIYNSYTNPL 245

  Fly   260 NTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAAL----CPNRNCGAGISV---DRN------N 311
            ....||:..|:......|:||:|.|..|....:::|    ||      |.||   |.|      .
  Fly   246 MGTSQRQHQLRLSRRLECICSRCLDPTEMGTHMSSLKCKECP------GFSVCEIDSNGKLGDWR 304

  Fly   312 CPRCDAGISP----KLRNAFNEAMTLTRHNLENMKDVAYLDVCKVCLDKQTGVFHP--------- 363
            ||.|.|.::.    :|:.|...|:      ::.|.|   |.|.:..|.:...:.||         
  Fly   305 CPDCRALLTAAEVHELQAAVGSAL------VDAMGD---LQVYEALLTQYGPLLHPNHFMLLDIK 360

  Fly   364 LNVWYVKTLDAAFEA---------AIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLLHMKLGK 419
            .|:..:....|...:         |..|...||.|...:.::||..|.:.     :||....|..
  Fly   361 QNIASILRAAALMNSMDQPCKKLLARRVELCSDLLPVCRAVVPGISKLYA-----IGLFEYLLAL 420

  Fly   420 IQLYEGH-------SKEALHHLEEAQRILT 442
            ::|.|..       .||.:.||..|..:.|
  Fly   421 VELVELQFAESDLSKKEYVAHLRTASLVAT 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 10/37 (27%)
TPR_12 377..440 CDD:290160 18/78 (23%)
SmydA-7NP_001261039.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452051
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.750

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