DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and smyd1a

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:496 Identity:113/496 - (22%)
Similarity:203/496 - (40%) Gaps:104/496 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KSKNLKNPAPQIKRGQRILTEKPFAFVLKSQYRLERCDNCL-EATKVLKCSNCRYVSYCHRSCQM 87
            |.:.|:. ...:..|:.:..|..||.|:.....|:.|.:|. ......:|:.|::..||.|:||.
Zfish    17 KGRGLRG-TRDLSAGEVVFAEASFAAVVLDSLSLQVCHSCFRRQVNPHRCAQCKFAHYCDRTCQR 80

  Fly    88 QAWGQHKHECPFLKKVHPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAEIK 152
            .||.:|:.||..::.: .:...:..|::.|::.|::                |...|:|      
Zfish    81 AAWDEHRKECSAIRNI-GKAPNENVRLVARILWRIQ----------------KHTGLVS------ 122

  Fly   153 NDPMRLEHLDSLHAVLTDMMAESPSTV-----------PNKTELMS------IYGRLITNGFNIL 200
              ..:|..||.|...|:.|..|....:           |.|::.:.      ::|.:..|||.:.
Zfish   123 --DSQLTTLDMLEDHLSRMTPEDLKELKVDVKTFYTYWPKKSKAVGEDYVSHLFGVISCNGFTLS 185

  Fly   201 DAE-MNSIATAIYLGVSITDHSCQPNAV------------ATFEGN-ELHVHAIEDMECLDWSKI 251
            |.. :.|:...::..:.:.:|.|.||..            |:|..: .:.:.|:|.:..  ..::
Zfish   186 DQRGLQSVGIGLFPNLCLVNHDCWPNCTVILNHGDQSALDASFHSSRRIELRALEPISA--GQEL 248

  Fly   252 FISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCPNRNCGAGISVDRNNCPRCD 316
            .:||:|.|:....|:..|::.|||.|.|..|.:..:. |::.|:.|..:                
Zfish   249 TVSYVDFLSVSTDRQRLLQQQYYFDCKCEHCVNGTKD-ELMTAVKPTED---------------- 296

  Fly   317 AGISPKLRNAFNEAMTLTRHNLE------------NMKDVAYLDVCKVCLDKQTGVFHPLNVWYV 369
             |..|    :......||..:|:            |..:|  :.:|:.||:||..||...||..:
Zfish   297 -GKQP----SAEVVKQLTDFSLQALVKIEAARAQGNFHEV--IRICRECLEKQDPVFADTNVHVL 354

  Fly   370 KTLDAAFEAAIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHL 434
            :.|..|.|....:.::.:|..|.||::.|:.|.:.|.|..||:..|:.|....:.| ..||.|.|
Zfish   355 RVLSTASEVLSFLQQFQEAAGYAQRMVDGYMKLYHPNNAQLGMAIMRAGVTHWHAG-LIEAAHGL 418

  Fly   435 E-EAQRILTVTHGRDHRL------LTEQLYMLVLQARQEAH 468
            . .|..||.:|||..|.:      :..|..|.:...:|..|
Zfish   419 ICRAYGILMITHGPHHPISKDLEAMRRQTEMELRMFKQNEH 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 12/37 (32%)
TPR_12 377..440 CDD:290160 19/63 (30%)
smyd1aNP_991103.2 zf-MYND 52..90 CDD:280009 12/37 (32%)
SET <203..252 CDD:279228 8/50 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582768
Domainoid 1 1.000 72 1.000 Domainoid score I9265
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 186 1.000 Inparanoid score I3918
OMA 1 1.010 - - QHG55359
OrthoDB 1 1.010 - - D553549at33208
OrthoFinder 1 1.000 - - FOG0000637
OrthoInspector 1 1.000 - - otm25432
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12197
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X437
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.870

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