DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and Smyd4

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_001096081.1 Gene:Smyd4 / 319822 MGIID:2442796 Length:799 Species:Mus musculus


Alignment Length:582 Identity:118/582 - (20%)
Similarity:200/582 - (34%) Gaps:176/582 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SATASACSSKSKNLKNPAPQ-IKRGQRILTEKPFAFVL------KSQYRLER------------C 60
            |.:.|.|:...|.....|.: |..|:.::.|..|..||      :..:.||.            |
Mouse   232 SLSVSLCTHPLKGRHLVATKDILPGELLVKEDAFVSVLIPGEMPRPHHCLENKWDTRVTSGDLYC 296

  Fly    61 DNCLEAT-KVLKCSNCRYVSYCHRSCQMQAWG-QHKHEC-------------------PFLKKVH 104
            ..||:.| ..:.|.:|.|..||.:.|..|||. .|..||                   ..|.:..
Mouse   297 HRCLKHTLATVPCGSCSYAKYCSQECMQQAWDLYHSTECSLGGLLLTLGVFCHVALRMTLLARFE 361

  Fly   105 --PRVVPDAARMLCRLI----LRLEHGGDLIRGY-YTEHGSRKFRDLM---------------SH 147
              .|||    ||||..:    ..|....:|::.: ||..|..:.:..:               |:
Mouse   362 DVDRVV----RMLCDEVGSTDTCLPESKNLVKAFDYTSQGESEEKSKIGEPPIPGCNVNGKYGSN 422

  Fly   148 YAEI--------KNDPMRLEH----LDSLHAVLTDMMAES-----------PSTVPNKTELMSIY 189
            |..|        |:.|   ||    ..|:.|:...:.|:|           .:..|.....::::
Mouse   423 YNAIFSLLPHTEKHSP---EHRFICAISVSALCRQLKADSVQAQTLKSPKLKAVTPGLCADLTVW 484

  Fly   190 G--------------RLITN----GFN---ILDAEMNSIATAIYLGVSITDHSCQPNAVATFEGN 233
            |              :.||:    |.|   |.::....:||.|:..||:.:|||:||...:|.|.
Mouse   485 GAAMLRHMLQLQCNAQAITSICHTGSNESIITNSRQIRLATGIFPVVSLLNHSCRPNTSVSFTGT 549

  Fly   234 ELHVHAI-------EDMECLDWSKIFISYIDLLNTPEQRRLDLKE-------HYYFLC------- 277
            ...|.|.       |.:.|..              |.:.|:.:.|       .|:|.|       
Mouse   550 VATVRAAQRIAKGQEILHCYG--------------PHESRMGVAERQQRLSSQYFFDCRCGACHA 600

  Fly   278 --------------VCSKCTDAKESKEMLAALCPNRNCGAGISVDRNNCPRCDAGISPKLRNAFN 328
                          .|..|....:..::|:  |.|.:|...:|.|:         :..:|:: ..
Mouse   601 ETLRAAAAPRWEAFCCKTCRALMQGNDVLS--CSNESCTNSVSRDQ---------LVSRLQD-LQ 653

  Fly   329 EAMTLTRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQ 393
            :.:.:.:..|...|....:.....|.:.........:....:..|...:|...:|.|..:..:.|
Mouse   654 QQVCMAQKLLRTGKPEQAIQQLLRCREAAESFLSAEHTVLGEIEDGLAQAHATLGNWLKSAAHVQ 718

  Fly   394 RLLPGFRKYHGPWNPLLGLLHMKLGKIQLYEGHS-KEALHHLEEAQRILTVTHGRDHRLLTE 454
            :.|......|||.:..:|....||.:: |:.|.: .|||..:.:|:|||.|..|.:...:.|
Mouse   719 KSLQVVETRHGPSSVEIGHELFKLAQV-LFNGLAVPEALSAIWKAERILLVHCGPESEEVRE 779

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 14/38 (37%)
TPR_12 377..440 CDD:290160 17/63 (27%)
Smyd4NP_001096081.1 TPR_11 68..132 CDD:290150
TPR repeat 68..96 CDD:276809
TPR repeat 101..136 CDD:276809
S-adenosyl-L-methionine binding. /evidence=ECO:0000250 112..114
zf-MYND 296..335 CDD:280009 14/38 (37%)
SET <524..570 CDD:279228 16/45 (36%)