DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and set6

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_596514.1 Gene:set6 / 2541370 PomBaseID:SPBP8B7.07c Length:483 Species:Schizosaccharomyces pombe


Alignment Length:424 Identity:90/424 - (21%)
Similarity:156/424 - (36%) Gaps:123/424 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GQRILTEKPFAFVLKSQYRLERCDNCL-EATKVLKCSNCRYVSYCHRSCQMQAWGQHKHECPFLK 101
            |:.|:.::.....|.|......|..|. |..|..:|:.|:.:.||.:.||...|..||.||..|:
pombe    27 GKIIIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLECKALQ 91

  Fly   102 KVHPR-VVPDAARMLCRLILRLEHGGDLI---RGYYTEHGSRKFRDLMSHYAEIKNDPMRLEHLD 162
            ..... ::|...|:|.||.|..:....:|   .|:..|     |:.:.|.:::.:.......|..
pombe    92 ASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNE-----FQAVSSSWSDAELIASAASHYT 151

  Fly   163 SLHAVLTDMMAESPSTVPNKTEL-MSIYGRLITNGFNILDAEMNSIATAIYLGVSITDHSCQPNA 226
            .::                :.|| ..::.||..|..|::.:..:|:...:...:...:|||.||.
pombe   152 QIY----------------QAELFQKLFCRLAVNAMNLVTSSFDSLGMCLDTILCRLNHSCDPNC 200

  Fly   227 VATFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEM 291
            ...|:|..:.:.:..|::  ...::||||||:......|:..|.:.|:|.|.|.:|.:...:||.
pombe   201 QIIFDGAIVQLVSKRDIK--KDEQLFISYIDIRLPKSIRQKQLLKKYFFSCYCPRCENDHTTKET 263

  Fly   292 LAALCPNRNCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVCKVCLDK 356
            ..:....|                       |||    :.:|.: ||...:|:            
pombe   264 DGSKWMGR-----------------------LRN----SKSLMK-NLAMARDL------------ 288

  Fly   357 QTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLLHMKLGKIQ 421
                                        ||          .|:::...||:.||.  |:|||.:.
pombe   289 ----------------------------WS----------CGWKQTAFPWSNLLH--HIKLGMLD 313

  Fly   422 ----------LYEGHSK----EALHHLEEAQRIL 441
                      ||...|.    :|||.::|.|.:|
pombe   314 ESNFNGAFAALYLKSSADEFLDALHVVDEYQLLL 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 13/37 (35%)
TPR_12 377..440 CDD:290160 19/76 (25%)
set6NP_596514.1 SET 5..483 CDD:225491 90/424 (21%)
zf-MYND 49..87 CDD:280009 13/37 (35%)
SET <142..227 CDD:279228 18/102 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41491
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000637
OrthoInspector 1 1.000 - - oto101775
orthoMCL 1 0.900 - - OOG6_101699
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 1 1.000 - - X437
TreeFam 1 0.960 - -
98.700

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