DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and set-10

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_493620.2 Gene:set-10 / 185237 WormBaseID:WBGene00009370 Length:430 Species:Caenorhabditis elegans


Alignment Length:355 Identity:87/355 - (24%)
Similarity:149/355 - (41%) Gaps:55/355 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 ILTEKPFAFVLKSQYRLERCDNCL------EATKVLKCSNCRYVSYCHRSCQMQAWGQ-HKHECP 98
            :..|:|.|.||..|:....|..|.      :.|::|.|.:|..||||...||.:.|.. |:.||.
 Worm     4 VAREQPLAAVLSPQFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKCQRKDWKSCHQFECE 68

  Fly    99 FLKKVHPRVVPDAARMLCRLILRLEHGGDLIRGYYT-EHGSRKFRDLMSHYAEIKNDPMRLEHLD 162
            .|:.............||..:|...      |...| ........||.::|.|.::.|   ||..
 Worm    69 ILRCQGSSTPMTLTMKLCIRVLLAS------RSTQTPSFNGAVLEDLETNYKEFRSSP---EHNQ 124

  Fly   163 SLHAVLTDMMAESPSTVP-----NKTELMSIYGRLITNGFNIL-DAEMNSIATAIYLGVSITDHS 221
            .|..|||.:.:...:..|     |||  :.|...::.|.|:|: :..:..|.:.:|:||:..:||
 Worm   125 FLSDVLTIISSSGQNIFPTSLETNKT--IGIICSVLCNSFSIINEKRVEPIGSGLYVGVAKHNHS 187

  Fly   222 CQPNAVATFEGNELHVHAIEDMECLDWSK-IFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDA 285
            |...:...||||::.:...::    ::|| :.|||:..:....:||..::..::..|.|..|.:.
 Worm   188 CASTSHVVFEGNQVFLRTNQE----EYSKELTISYVSRMLPTSERRKTIRGVHFLTCQCEMCKNE 248

  Fly   286 KESKEMLAALCPNRNCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENM--------- 341
            :.....|::.|..:|| .|......||..|:.........:.:..:.|. ..:||:         
 Worm   249 ELDLIGLSSKCRTKNC-TGFVKGSGNCSVCEKLAFLPFEQSIHSTLNLL-DIIENLHKTNQFTTV 311

  Fly   342 KDVAYL--------DVCKVC------LDKQ 357
            :::|||        |:...|      ||:|
 Worm   312 QELAYLQKLRADYQDILAECNVAILQLDEQ 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 14/43 (33%)
TPR_12 377..440 CDD:290160
set-10NP_493620.2 zf-MYND 23..67 CDD:366792 14/43 (33%)
SET 57..247 CDD:394802 50/204 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 1 1.000 - - FOG0000637
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101699
Panther 1 1.100 - - O PTHR12197
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.810

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