DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and set-14

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:460 Identity:116/460 - (25%)
Similarity:184/460 - (40%) Gaps:78/460 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LTEKPFAFVLKSQYRLERCDNCLEA-TKVLKCSNCRYVSYCHRSCQMQAWGQHKHECPFLKKVHP 105
            |.|..:||.|........|:.||.: .::.|||.||.::||.:.||...|..||.||..: |.|.
 Worm     8 LHENVYAFALARDQVESYCNQCLTSMAELKKCSACRRLAYCSQECQRADWKLHKVECKAI-KTHN 71

  Fly   106 RVVPDAARMLCRLILRLEHGGD-LIRGYYTEHGSRKFRDLMSHYAEIKNDPMRLEHLDSLHAVLT 169
            .|..|:.|::.|:..:|....| .|..||....:|.|::|..|.:....|.         .:.:.
 Worm    72 EVANDSIRLVMRIAGKLSRNEDGEIEAYYIPGVARNFQNLEHHPSSYDADE---------ESFVK 127

  Fly   170 DMMAESPSTVPNKTELMSIYGRLITNGFNILDAEMNSIATAIYLGVSITDHSCQP-------NAV 227
            :....:.:..|::..:..|:.::..|.|.:.::..|.|...:.:.:|..:|||:|       |..
 Worm   128 EYFQFAIAPHPDRDLIKLIFQKVSINSFVVGNSTGNPIGVGLCIKLSAANHSCKPLTRVCYRNRT 192

  Fly   228 A-----------TFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSK 281
            |           |.|| ..|                 ||||.|...:.||..||:.|.|||.|..
 Worm   193 AMLVPVSSELPSTLEG-ACH-----------------SYIDELMPRDMRRDTLKKKYKFLCQCDG 239

  Fly   282 CTDAKESKEMLAALCP------NRN--------CGAGISVDRNNCPRC--DAGISPKLRNAFNEA 330
            |.|...:..|.|..|.      .||        ||..:|.|.....|.  :|||:.:.|.| |:|
 Worm   240 CLDEDRNARMEAWTCGICVKGWMRNKENGQCELCGWTMSKDHFELCRTAEEAGIAARSRLA-NDA 303

  Fly   331 MTL-TRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQR 394
            :.| |:.||           |:..||......|..||..:..|...:..::.....:.|...|..
 Worm   304 IPLETKRNL-----------CEKLLDLFQDTLHDHNVHRIPVLRCLYICSLAAQNITAAAKTGGT 357

  Fly   395 LLPGFRKYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHRLLTEQLYML 459
            ||.....|....:|.:.....:|.::....|...:|...|:|.:..|...:..| .::...:|.:
 Worm   358 LLSIMLVYQNTTDPAILFQKYQLAQLFCAAGAKTQATKLLQEIEEPLEKIYTPD-SMICRNVYCM 421

  Fly   460 VLQAR 464
            :|:||
 Worm   422 ILKAR 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 15/37 (41%)
TPR_12 377..440 CDD:290160 11/62 (18%)
set-14NP_496323.1 zf-MYND 26..64 CDD:280009 15/37 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D553549at33208
OrthoFinder 1 1.000 - - FOG0000637
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101699
Panther 1 1.100 - - LDO PTHR12197
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 1 1.000 - - X437
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.850

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