DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd3 and smyd3

DIOPT Version :9

Sequence 1:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_031758360.1 Gene:smyd3 / 100494527 XenbaseID:XB-GENE-854970 Length:448 Species:Xenopus tropicalis


Alignment Length:436 Identity:129/436 - (29%)
Similarity:219/436 - (50%) Gaps:51/436 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 IKRGQRILTEKPFAFVLKSQYRLE-RCDNCL-EATKVLKCSNCRYVSYCHRSCQMQAWGQHKHEC 97
            :..|..::..:|:.:.:   .|:: .||:|| ...|:|:||.|:...||:..||.:||..||.||
 Frog    44 MSHGLTVMIAEPYVYTV---CRIKTACDHCLHRKEKLLRCSQCKVARYCNSHCQRKAWQGHKREC 105

  Fly    98 PFLKKVHPRVVPDAARMLCRLILRLEHGGDLI-RGYYTEHGSRKFRDLMSHYAEIKNDPM-RLEH 160
            ..|:...|.|.|::.|::.::|.::....|.. ...||      ..||.||..|...:.. .|.|
 Frog   106 KCLRSTLPNVPPNSVRLVGKIIFKMLQKPDTASEELYT------ISDLQSHIKEASEEVKDGLRH 164

  Fly   161 L-DSLHAVLTDMMAESPSTVPNKTELMSIYGRL---IT-NGFNILDAEMNSIATAIYLGVSITDH 220
            | .:|...|.:.:.|. |.:|...:::..:|::   :| |.|.|.|.||..:...:|..:|:.:|
 Frog   165 LATALQHYLKEEIQEI-SQLPPGFQVLEYFGKVSAKVTCNSFTISDGEMQDVGVGLYPSMSLLNH 228

  Fly   221 SCQPNAVATFEGNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDA 285
            ||.||.|..|||..|.:..::::.  ...::.|||||:....:.||..|:..|.|||.|.:|...
 Frog   229 SCDPNCVIVFEGTCLLLRTVKEIP--KGEELTISYIDVKMPTQGRRDQLQRQYCFLCDCQRCLLR 291

  Fly   286 KESKEMLAALCPNRNCGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVC 350
            .:.::|||.                     ||..|.::.::.:....|...|...    ..|::|
 Frog   292 DKDEDMLAG---------------------DAEASREVESSVSRLEELLSQNTAE----EALNLC 331

  Fly   351 KVCLDKQTGVFHP-LNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFRKYHGPWNPLLGLLH 414
            |..:::   .:.| .|::.:|.||.|.:|:|::|.|.:||.:|.|.|..:..|:..::|:..:..
 Frog   332 KTLMNR---YYLPDKNIYQLKILDCAMDASIDLGLWEEALHFGLRTLEPYSLYYSNYHPVRAVQL 393

  Fly   415 MKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHRLLTEQLYMLV 460
            ||:||:|.|:|...||:..|::|..|:.|||||||. .|:||..|:
 Frog   394 MKVGKLQNYQGLFAEAMKTLKQAFDIMKVTHGRDHG-QTQQLAELM 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 17/37 (46%)
TPR_12 377..440 CDD:290160 22/62 (35%)
smyd3XP_031758360.1 SET_SMYD3 24..289 CDD:380980 77/256 (30%)
zf-MYND 67..105 CDD:396356 17/37 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 91 1.000 Domainoid score I7647
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41491
Inparanoid 1 1.050 191 1.000 Inparanoid score I3748
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D553549at33208
OrthoFinder 1 1.000 - - FOG0000637
OrthoInspector 1 1.000 - - otm49082
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X437
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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