DRSC/TRiP Functional Genomics Resources

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Protein Alignment lola and rib

DIOPT Version :10

Sequence 1:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster
Sequence 2:NP_001261085.1 Gene:rib / 44855 FlyBaseID:FBgn0003254 Length:680 Species:Drosophila melanogaster


Alignment Length:756 Identity:162/756 - (21%)
Similarity:257/756 - (33%) Gaps:252/756 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQEQYDKHP 69
            |.:||||||||:.|:.:...|.|..:.|||:|..:.:..:||:|||:|.||||..:|::....|.
  Fly    16 QTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVDDEQFQAHRVVLAANSPYFQHILKDVPQDHC 80

  Fly    70 IFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDN-RTGGGVAPKPESSGH 133
            ..||..||..|:.|::.|||.||..:::.|...:|:.|:.||:|||.|| ......:..|.||  
  Fly    81 SIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHASVTPTSS-- 143

  Fly   134 HRGGKLSGAYTLEQTKRARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDNSNSS 198
                  |||             |||...:|..|                           |.:||
  Fly   144 ------SGA-------------GGAKPQNGSAS---------------------------NHSSS 162

  Fly   199 VLQAAASNQSILQQTGAGLAVSALVTTQLSSGPAA--GTSSQASSTQQQQPLTSTNVTKKTESAK 261
            |:           .|...::.||.:::..|..|..  |.....|...||||::::.:  ....|.
  Fly   163 VI-----------STSTHISPSAAISSSCSPPPPPQFGYQPGYSHYPQQQPMSASQI--PAGEAP 214

  Fly   262 LTSSTAAPASGAS-------------ASAAVQQAHLHQQQAQTTSDAINTENVQAQSQGGAQGVQ 313
            ||.:.|.|.|.||             ::||.....:::..|.  .:.:..:.:.|.|.....| .
  Fly   215 LTPTQATPHSAASGAGEAGGQWPLTPSAAAAMLNSVYESAAD--MNPLKRKKLSAISSMLLSG-N 276

  Fly   314 GDDEDIDEGSAVGGPNSATGPNPASASASAV----HAGVVVKQLASVVDKSSSNHKHKIKDNSVS 374
            .|...:....|...|..::.|.|.:|:....    |...   ||.:.:..|.....|....   |
  Fly   277 RDTPILRNVLAQANPADSSQPGPMNANGEKTPTHPHQNT---QLPAGLGVSGGERNHSFNG---S 335

  Fly   375 SVGSEMVIEPKAEYDDDAHDENVEDLTLDEEDMTMEELDQTAGTSQGGEGSSQTYATWQHDRSQD 439
            ..|.:.  ||.:.|.|.:.:|.                     |.|.|....:    |:..:...
  Fly   336 DYGGDK--EPLSPYTDRSFEEE---------------------TGQSGGKKPE----WKRYKQYT 373

  Fly   440 ELGLMAQDAQQRDPQASKQDKGEQTEGAQDEFELDDCLLESNDIVITQNKDGFVLHVKKLGNITA 504
            ...:|......|:..::.|        |..::.|....|...              |:|| |||.
  Fly   374 RADMMCAIQAVREGMSALQ--------ASRKYGLPSRTLYDK--------------VRKL-NITT 415

  Fly   505 AK------------LEENQAVAQQQGQAAVT---------------------VTGPAGQPTPTI- 535
            .:            .|.:|..:.....||..                     |....|.| ||| 
  Fly   416 GRGTHRTPKRSPPGAESSQGFSYSAAAAAAAHNYGHGHGHHSEVKRDQKVDHVPAHHGMP-PTIP 479

  Fly   536 -------------------------TELLNA---AAASHSEPKPTLTTLTSTPIKL--------- 563
                                     .|.|:|   |||:|:    ....|:|:|.::         
  Fly   480 PSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHA----AANRLSSSPAEMDQRSNGHGM 540

  Fly   564 --PSSECELINIKKIIPATTTIATHHPHTSSTI-----IHPHHII-----QHVSQEPHHQEHHQQ 616
              ||.:                ..|:||....:     .|..:||     |...::...:|.|:|
  Fly   541 RSPSPQ----------------GRHYPHEQEAMDLEMEKHEQNIIKRERDQDEREDADDEEDHEQ 589

  Fly   617 HQTIHIEEVPQTSQQHHQQQHHHQLQTVQPTHTQVQSIITA 657
            .   |:|::....::.....:     :.|||......|:.|
  Fly   590 E---HVEDLSLARKERPPSPY-----SPQPTEAGAGVIMHA 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lolaNP_788308.3 BTB_POZ_BAB-like 31..114 CDD:349624 32/82 (39%)
C2H2 Zn finger 905..925 CDD:275368
zf-H2C2_5 935..957 CDD:404746
C2H2 Zn finger 935..955 CDD:275368
ribNP_001261085.1 BTB_POZ_BAB-like 42..125 CDD:349624 32/82 (39%)
HTH_psq 373..417 CDD:283007 12/66 (18%)
Blue background indicates that the domain is not in the aligned region.

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