DRSC/TRiP Functional Genomics Resources

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Protein Alignment lola and br

DIOPT Version :10

Sequence 1:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster
Sequence 2:NP_001162638.2 Gene:br / 44505 FlyBaseID:FBgn0283451 Length:1011 Species:Drosophila melanogaster


Alignment Length:1134 Identity:237/1134 - (20%)
Similarity:353/1134 - (31%) Gaps:432/1134 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQEQY 65
            |||.|.|||||||:||::.|.|:.|.::|..||.|||.||:.:|||:||||||||||..||:...
  Fly     1 MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKSTP 65

  Fly    66 DKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD------------- 117
            .|||:.:|:||.:.:|.|:::::|.||||:.|..|.:.||.||.|::.||:.             
  Fly    66 CKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQQAEDTHSHLAQI 130

  Fly   118 -------------------------------------NRTGGGVAPK---PESSGH--------- 133
                                                 :|.|.|..|.   |....|         
  Fly   131 QNLANSGGRTPLNTHTQSLPHPHHGSLHDDGGSSTLFSRQGAGSPPPTAVPSLPSHINNQLLKRM 195

  Fly   134 ---HRGGKLSGAYTLEQTKRA--RL-ATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDA- 191
               ||.   |.|...|:|..|  || .:..::..||.| ||...::||.......|..|.:... 
  Fly   196 AMMHRS---SAAAAAEETSHAFKRLRGSDNSLPLSGAV-GSGSNNNSPDLPPLHARSASPQQTPA 256

  Fly   192 -------HDNSNSSVLQAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLT 249
                   |:|:|:..|:....|    ..||.|           :||...|..:.||         
  Fly   257 DFSTIKHHNNNNTPPLKEEKRN----GPTGNG-----------NSGNGNGNGNGAS--------- 297

  Fly   250 STNVTKKTESAKLTSSTAAPASGASAS----------AAVQQAHLHQQQAQTTSDAINTENVQAQ 304
              |....:.|.||.|.|.:|.:.|.|.          .:...|:.:.:.   ::|:....:....
  Fly   298 --NGNGISISDKLGSLTPSPLARAGADDVKSEPMDMVCSNNNANANDEH---SNDSTGEHDANRS 357

  Fly   305 SQG-GAQG--VQGDDEDIDEGSAVG--------------------------GPNSATGPN----- 335
            |.| |.:|  ..|:||:|.:|.|..                          .|::..|.|     
  Fly   358 SSGDGGKGSLSSGNDEEIGDGLASHHAAPQFIMSPAENKMFHAAAFNFPNIDPSALLGLNTQLQQ 422

  Fly   336 -------PASASASAVHAGVVVK-QLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDA 392
                   |...|..::.:||:|. ........||||:.:...:|.          :.|.|.....
  Fly   423 SGDLAVSPQGGSTGSLLSGVIVPGGSGGTPSNSSSNNNNNNSNNQ----------QQKVEQQSSP 477

  Fly   393 HDENVEDLTLDEEDMT----MEELDQTAGTSQGGEGSSQTY---ATWQHDRSQDELGLMAQDAQQ 450
            |     .|...:...|    ..:|.|....|.||...|...   |..:...|:...|:.......
  Fly   478 H-----QLLQQQHHSTPHTNSPQLKQEQPKSGGGSCKSSDLHIAAGSERSLSRSSQGMPDAGGHS 537

  Fly   451 RDPQAS----KQDKGEQTEGAQD-EFELDDCLLESNDIVITQNKDGFVLHVKKLGNITAAKLEEN 510
            ..|..:    |:::..:.|..:: |.|.:..|....|                        ||. 
  Fly   538 ATPSPTAAYHKRERERERERERERERERERSLDHERD------------------------LER- 577

  Fly   511 QAVAQQQGQAAVTVTGPAGQPTPTITELLNAAAASHSEPKPTLTTLTSTPIKLPSSECELINIKK 575
                          .|..|.|.|       ...:.||.......:|..:..:|.::..||     
  Fly   578 --------------PGGTGSPPP-------PPPSHHSHFGQHPLSLLPSHHQLHATHHEL----- 616

  Fly   576 IIPATTTIATHHPHTSSTIIHPHHIIQHVS-QEPHHQEHHQQH---------------------- 617
                 :..|.||.|..:...|.|.:.:..| .|.||..||::.                      
  Fly   617 -----SAAAAHHAHAHAHAAHAHALARAGSPMEHHHLLHHRRASLSPSGAVSSASGAGGRGGGAG 676

  Fly   618 ----------QTIHIEEVPQ---------------------------TSQQHHQQQH-------- 637
                      .::..::|.|                           |.::|.:|||        
  Fly   677 GPGGPGGSLLSSVRAQDVAQANRLLLPLPLNACHRCDVCGKLLSTKLTLKRHKEQQHLQPLNNAV 741

  Fly   638 ---------------------------HHQL--------QTVQP---THTQVQSI--ITAHPGQT 662
                                       ||..        |...|   .|..:.|:  ..|....:
  Fly   742 CNLCHKVFRTLNSLNNHKSIYHRRQKNHHSYFHHGAGVSQAGSPGSRLHQSLSSLSAAAAAANNS 806

  Fly   663 INLVGLR------NVQLADSKPIASRIRYSRGKIIGPTV-------QNLQIVETHEPIQHQHHEL 714
            :|:.|..      |...|.:...|:........|:|...       ..||:...|   |.|..:.
  Fly   807 VNVGGGSVGGAGGNAVAAAAAAAAAAAELLLSPIVGAAAVAGGTASSTLQLAAAH---QQQQQQS 868

  Fly   715 SDG--------------TKYEISEIDLNNPNASAAIISDLVKYAEIDDIELPDGTKIGIGFAPSE 765
            |.|              ...::..:.|||..|:||..:.......      ..|...|:|..|..
  Fly   869 SPGIVKPCMDFLXDQQQLLQQLFHVALNNSAAAAAAAAAAAAAGG------SGGGPGGVGAGPES 927

  Fly   766 IT-----------------------EHMQTSGGETHITTIEHE-PQELQTVHQHEQTQQTHHIHA 806
            |.                       ||....||.:....::|. |..|  .|||..:    |.|.
  Fly   928 INGGGQEYGGVQGPSGTPTVDLTQLEHAAGGGGFSAAAALQHHLPHHL--AHQHPMS----HQHP 986

  Fly   807 GQLQTHHIQTVVQSSSGQQQHDQQQHHQH 835
            .|| ||             ||.....|||
  Fly   987 HQL-TH-------------QHPHPHPHQH 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lolaNP_788308.3 BTB_POZ_BAB-like 31..114 CDD:349624 42/82 (51%)
C2H2 Zn finger 905..925 CDD:275368
zf-H2C2_5 935..957 CDD:404746
C2H2 Zn finger 935..955 CDD:275368
brNP_001162638.2 BTB_POZ_BAB-like 31..114 CDD:349624 42/82 (51%)
C2H2 Zn finger 712..729 CDD:275368 1/16 (6%)
C2H2 Zn finger 742..763 CDD:275368 0/20 (0%)
Blue background indicates that the domain is not in the aligned region.

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