DRSC/TRiP Functional Genomics Resources

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Protein Alignment lola and chinmo

DIOPT Version :10

Sequence 1:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster
Sequence 2:NP_722717.2 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster


Alignment Length:689 Identity:159/689 - (23%)
Similarity:251/689 - (36%) Gaps:195/689 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQEQY 65
            ||..|||||:||:..|.|...|..|.:::.|.|..|:.:|...||||::|:|||..||.|    :
  Fly     1 MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLILAACSKKFADL----F 61

  Fly    66 DKHP-----IFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSDNRTGGGVA 125
            :..|     :.||:......:.|::::||:|||::||:.|.:.||:|||||:||||         
  Fly    62 ENTPTNGQCVIILEATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGLS--------- 117

  Fly   126 PKPESSGHHRGGKLSGAYTLEQTKRARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMEND 190
                                  |:..|||...|....||:|    ...||:      .|||:.|.
  Fly   118 ----------------------TETGRLAAQQAQQHMGDLS----PLDSPT------GRRSVRNS 150

  Fly   191 AHDNSNSSV-------LQAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPL 248
            ....|:|.|       |...|:..:.:...|.|..:| |.......|.||..::.|||....  .
  Fly   151 LSGGSSSIVPGGVGIGLGGGATGANSMSGMGIGNGLS-LAGMAAGGGMAAAANAAASSLSTL--A 212

  Fly   249 TSTNVTKKTES--AKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTENVQAQSQGGAQG 311
            .|.|:..:..|  |.:.|.:||...|:.:..|                            |...|
  Fly   213 ASANIVDRCGSAGANIISGSAAGIGGSHSGGA----------------------------GNGSG 249

  Fly   312 VQGDDEDIDEGSAVGGPNSATGPNPASASASAVH-----AGVVVKQLASVVDKSSSNHKHKIKDN 371
            ..|..     |:.||......||....:.|.|.|     .|::.::..|::....|:....:...
  Fly   250 TVGIG-----GNGVGSGGGNNGPISLGSGAGAAHHLGGSTGILKQECDSLMHPGGSSSSSGMGYT 309

  Fly   372 SVSSVGSEMVIEP-------KAEYDDDAHDENV-EDLTLDEEDMTMEELDQTAGTSQGGEGSSQT 428
            .|..:...:..||       ::.|.:.....:| .|.:...|..:..........|.....::.|
  Fly   310 HVPPIYRPINYEPPRKRAIVRSPYSEQEQRGSVLRDGSKSSECPSPINKPPYHRPSSSASSTAPT 374

  Fly   429 YATWQHDRSQDELGLMAQDAQQRDPQASKQD---------------------KGEQTEGAQDEFE 472
            .|...|             :::..||:|:.:                     |.|:..|:.:|..
  Fly   375 EADTMH-------------SERASPQSSRYENHSPSTTAGNGNATSSLERIVKSERNNGSANEAN 426

  Fly   473 LDDCLL--ESNDIVITQNKDGFVLHVKKLGNI---------------TAAKLEEN-QAVAQQQGQ 519
            .||..|  ||.|   ...:|   |.| ||.|:               |...|.|| :|.......
  Fly   427 DDDRELMDESTD---NGAED---LRV-KLENLKYSPPPPPNSNTSSTTPNTLLENLKADGTLSSN 484

  Fly   520 AAVTVTGPAGQPTPTITELLNAAAASHSEPKPTLTTLTSTPIKLPSSECELINIKKIIPATTTIA 584
            .|.:: .||        ::||...|:....|.::.|....  ||....|:     ::....|.:.
  Fly   485 LAASI-APA--------DMLNVWNATKMNNKNSVNTADGK--KLKCLYCD-----RLYGYETNLR 533

  Fly   585 TH----H-------PHTSSTIIHPHHIIQHVSQEPHHQE 612
            .|    |       |....|....:.:.:|:::| |.||
  Fly   534 AHIRQRHQGIRVPCPFCERTFTRNNTVRRHIARE-HKQE 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lolaNP_788308.3 BTB_POZ_BAB-like 31..114 CDD:349624 34/87 (39%)
C2H2 Zn finger 905..925 CDD:275368
zf-H2C2_5 935..957 CDD:404746
C2H2 Zn finger 935..955 CDD:275368
chinmoNP_722717.2 BTB_POZ_BAB-like 31..115 CDD:349624 34/87 (39%)
C2H2 Zn finger 519..540 CDD:275368 3/25 (12%)
C2H2 Zn finger 547..568 CDD:275368 4/21 (19%)
Blue background indicates that the domain is not in the aligned region.

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