DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lola and CG12236

DIOPT Version :9

Sequence 1:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster
Sequence 2:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster


Alignment Length:642 Identity:147/642 - (22%)
Similarity:241/642 - (37%) Gaps:166/642 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQEQY 65
            |...||:.|||||:...|....|....|:..||.:|..:|:.:||||||||:||.||..:.:|..
  Fly     1 MATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVLSSCSSYFKEIFKENP 65

  Fly    66 DKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGL-SDNRTGGGVAPKPE 129
            ..||:.|.|.:|:::|.:::::||:||||:.|:.|.:.|:.||.|.::|| ::.:....:...|.
  Fly    66 HPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQSFLQTAELLAVQGLTAEEKEKPQIPVAPL 130

  Fly   130 SSGHHRGGKLSGAYTLEQTKRARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDN 194
            .|.|    ||  ..|:..|.||                       .:.::::|            
  Fly   131 ISEH----KL--IKTIPSTIRA-----------------------VNEQQQQV------------ 154

  Fly   195 SNSSVLQAAASNQSI-------LQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLTSTN 252
              |:|.||..:.|:|       ||.|.|     :.|.:|:.:..||..::|....|.||......
  Fly   155 --SNVAQAQTATQTIEIPAATLLQATNA-----SQVPSQVVAAAAAAAAAQQLQVQHQQQQHHHV 212

  Fly   253 VTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTENVQAQ--------SQGGA 309
            .|.:.:..::.|:..............||....|||.|..|....|..||.|        :...|
  Fly   213 QTTQIQHIQVQSAPPPQQQQQQQQQQQQQQQQQQQQQQQQSQQQQTTPVQTQHLTITNAVALPAA 277

  Fly   310 QGVQ------GDDED------------IDEGSAVGGPNSATGPNPASASASAVHAGV---VVKQL 353
            ..|:      .||:|            .||.:.|           .:|..:.:...|   :...:
  Fly   278 SSVKKRKITFSDDDDNMYTTETVDYAVKDEQTIV-----------KTAEMTFLRGAVKMDIPDYI 331

  Fly   354 ASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDLTLDEEDMTME-ELDQTAG 417
            ...||...|:..........::..::.|.:..:||:.....|..|....|.::..:. |:.:..|
  Fly   332 VGEVDDRLSDGATPQTSQDATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLG 396

  Fly   418 TSQG--GEGSSQTYATWQHDRSQDELGLMAQDAQQRDPQASKQDKGEQTEGAQDEFELDDCLLES 480
            |:.|  |.||.|.        .:|..|                  |..|.|            .|
  Fly   397 TASGTPGAGSGQV--------MEDSGG------------------GSATTG------------PS 423

  Fly   481 NDIVITQ----NKDGFVLHVKKLGNITAAKLEENQAVAQQ----QGQAAVTVTGPA-------GQ 530
            ..:.:||    :|........|.|::|.|:..::.|.|..    ..:.:|..||.|       |:
  Fly   424 TTVSVTQVKSDSKASGTNAALKPGSVTVARSSKSGATASAPPAGSDEESVQYTGLAPLNCSFCGR 488

  Fly   531 PTPTITELLNAAAASHSEPKPTLTTLTSTPIKLPSSECELINIKKIIPATTTIATHH 587
            |..::..|....|:.|||              :...|.|.....|......:::||:
  Fly   489 PLKSVNALRRHIASRHSE--------------IQGKEHECFICMKSFKTKWSLSTHN 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lolaNP_788308.3 BTB 22..117 CDD:279045 39/95 (41%)
BTB 33..117 CDD:197585 36/84 (43%)
C2H2 Zn finger 905..925 CDD:275368
C2H2 Zn finger 935..955 CDD:275368
CG12236NP_727050.1 BTB 22..116 CDD:279045 38/93 (41%)
BTB 33..116 CDD:197585 35/82 (43%)
Herpes_capsid <376..467 CDD:283714 25/128 (20%)
C2H2 Zn finger 483..512 CDD:275371 7/42 (17%)
C2H2 Zn finger 514..535 CDD:275371 3/18 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.010

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