DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lola and Btbd18

DIOPT Version :9

Sequence 1:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster
Sequence 2:XP_002729248.1 Gene:Btbd18 / 100363270 RGDID:2323370 Length:724 Species:Rattus norvegicus


Alignment Length:605 Identity:119/605 - (19%)
Similarity:206/605 - (34%) Gaps:168/605 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DCTLAAEGKFLKAHKVVLSACSPYFATLLQEQ---YDKHPIFILKDVKYQELRAMMDYMYRGEVN 94
            |..|.|||:.:.||..:||||||:|...|:.:   ..:..:..|..:|.|.||.::|::|..|:.
  Rat    35 DALLQAEGEAVPAHCCILSACSPFFTERLERERPVQGRKVVLELGGLKIQTLRKLVDFLYTSEME 99

  Fly    95 ISQDQLAALLKAAESLQIKGLSDNRTGGG------------------------------------ 123
            :||::...:|.||..|::..|...:..||                                    
  Rat   100 VSQEEAQDVLSAARQLRVSELETLQLEGGKLVKAPQGRRLNRECLQPPSAAPISARVVVPRSRPR 164

  Fly   124 ------VAPKP----------ESSGHHRGGKLSGAYTLEQT----KRARLATGGAMDTSGDVSGS 168
                  ..|.|          |..|.|:...|..|..|..|    |:||:..            :
  Rat   165 TPLPVTQTPSPLGAVKLKSLGEEEGAHKKSNLPNADNLSDTLLLKKKARVCL------------T 217

  Fly   169 REGSSSPSRRRRKVRRRSMENDAHDNSNS------SVLQAAASNQSILQQTGAGLAVSALVTTQL 227
            :|.|||||.:|...:    ||.::..|.:      ||.:.....:..|.::.....|.....:.:
  Rat   218 QERSSSPSSQREGPK----ENKSNPGSTALPSLYPSVDEQLLPRKIRLSRSKPSPHVYTSKPSSM 278

  Fly   228 SSGPAA------------GTSSQASSTQQQQPLTSTNVTKKTESAKLTSSTA-----APASGASA 275
            .|||::            .|.|:|:....:|.....:..:.|........|.     :|.|.|.|
  Rat   279 LSGPSSMPTAPGRRLWRQRTVSEATQGVDKQKPGEVSTLQSTPDPPDVGKTGGKKQPSPESRAPA 343

  Fly   276 SAAVQQAHLHQQQAQTTSDAINTENVQ----AQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNP 336
            |.:|::..:.:.:.:...:....|.||    ..:|...|.::..|.|...|:.:...|....|  
  Rat   344 SNSVEEGQVGRVKLRKIVNGTCWEVVQEPPIRNTQDSPQILESSDADEPPGTLLSSVNEQEIP-- 406

  Fly   337 ASASASAVHAGVVVKQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDLT 401
              |.....|......:|..::..:|.:..|.:..:...|  |.|:...:.|.:.|..:....|.|
  Rat   407 --ARIQLCHDSPENSRLQDILLSASHSPDHPVVKSEFGS--SPMLTGKEPELNIDCREPYTFDTT 467

  Fly   402 LDEEDMTMEE--LDQTAGTSQ------------------------GGEGS-------SQTYATWQ 433
            |..:....|:  :...|.||:                        |.||.       |:|...|.
  Rat   468 LLSQPCEAEQYRITSAAATSELEEILDFMLCGSDVEPPVGSLESPGAEGCRTPSYHLSETGKNWI 532

  Fly   434 HDRS----------QDELGL----MAQDAQQRDPQASKQDKGEQTEG-------------AQDEF 471
            ....          :|..||    :.::.:..:|.:....:.|.||.             :::|.
  Rat   533 EGEEWCLPDMELWPRDLTGLEKEPVGENKEPVEPFSPLVMRSENTESIEPLSPLVMPSEVSREEL 597

  Fly   472 ELDDCLLESNDIVITQNKDG 491
            .|........:|..:|..||
  Rat   598 SLRGSWTPDLEITSSQPLDG 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lolaNP_788308.3 BTB 22..117 CDD:279045 30/86 (35%)
BTB 33..117 CDD:197585 30/86 (35%)
C2H2 Zn finger 905..925 CDD:275368
C2H2 Zn finger 935..955 CDD:275368
Btbd18XP_002729248.1 BTB 24..123 CDD:279045 30/87 (34%)
BTB 35..123 CDD:197585 30/87 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10373
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.