DRSC/TRiP Functional Genomics Resources

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Protein Alignment lola and Btbd18

DIOPT Version :10

Sequence 1:NP_788308.3 Gene:lola / 44548 FlyBaseID:FBgn0283521 Length:970 Species:Drosophila melanogaster
Sequence 2:NP_001417674.1 Gene:Btbd18 / 100363270 RGDID:2323370 Length:724 Species:Rattus norvegicus


Alignment Length:605 Identity:119/605 - (19%)
Similarity:206/605 - (34%) Gaps:168/605 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DCTLAAEGKFLKAHKVVLSACSPYFATLLQEQ---YDKHPIFILKDVKYQELRAMMDYMYRGEVN 94
            |..|.|||:.:.||..:||||||:|...|:.:   ..:..:..|..:|.|.||.::|::|..|:.
  Rat    35 DALLQAEGEAVPAHCCILSACSPFFTERLERERPVQGRKVVLELGGLKIQTLRKLVDFLYTSEME 99

  Fly    95 ISQDQLAALLKAAESLQIKGLSDNRTGGG------------------------------------ 123
            :||::...:|.||..|::..|...:..||                                    
  Rat   100 VSQEEAQDVLSAARQLRVSELETLQLEGGKLVKAPQGRRLNRECLQPPSAAPISARVVVPRSRPR 164

  Fly   124 ------VAPKP----------ESSGHHRGGKLSGAYTLEQT----KRARLATGGAMDTSGDVSGS 168
                  ..|.|          |..|.|:...|..|..|..|    |:||:..            :
  Rat   165 TPLPVTQTPSPLGAVKLKSLGEEEGAHKKSNLPNADNLSDTLLLKKKARVCL------------T 217

  Fly   169 REGSSSPSRRRRKVRRRSMENDAHDNSNS------SVLQAAASNQSILQQTGAGLAVSALVTTQL 227
            :|.|||||.:|...:    ||.::..|.:      ||.:.....:..|.::.....|.....:.:
  Rat   218 QERSSSPSSQREGPK----ENKSNPGSTALPSLYPSVDEQLLPRKIRLSRSKPSPHVYTSKPSSM 278

  Fly   228 SSGPAA------------GTSSQASSTQQQQPLTSTNVTKKTESAKLTSSTA-----APASGASA 275
            .|||::            .|.|:|:....:|.....:..:.|........|.     :|.|.|.|
  Rat   279 LSGPSSMPTAPGRRLWRQRTVSEATQGVDKQKPGEVSTLQSTPDPPDVGKTGGKKQPSPESRAPA 343

  Fly   276 SAAVQQAHLHQQQAQTTSDAINTENVQ----AQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNP 336
            |.:|::..:.:.:.:...:....|.||    ..:|...|.::..|.|...|:.:...|....|  
  Rat   344 SNSVEEGQVGRVKLRKIVNGTCWEVVQEPPIRNTQDSPQILESSDADEPPGTLLSSVNEQEIP-- 406

  Fly   337 ASASASAVHAGVVVKQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDLT 401
              |.....|......:|..::..:|.:..|.:..:...|  |.|:...:.|.:.|..:....|.|
  Rat   407 --ARIQLCHDSPENSRLQDILLSASHSPDHPVVKSEFGS--SPMLTGKEPELNIDCREPYTFDTT 467

  Fly   402 LDEEDMTMEE--LDQTAGTSQ------------------------GGEGS-------SQTYATWQ 433
            |..:....|:  :...|.||:                        |.||.       |:|...|.
  Rat   468 LLSQPCEAEQYRITSAAATSELEEILDFMLCGSDVEPPVGSLESPGAEGCRTPSYHLSETGKNWI 532

  Fly   434 HDRS----------QDELGL----MAQDAQQRDPQASKQDKGEQTEG-------------AQDEF 471
            ....          :|..||    :.::.:..:|.:....:.|.||.             :::|.
  Rat   533 EGEEWCLPDMELWPRDLTGLEKEPVGENKEPVEPFSPLVMRSENTESIEPLSPLVMPSEVSREEL 597

  Fly   472 ELDDCLLESNDIVITQNKDG 491
            .|........:|..:|..||
  Rat   598 SLRGSWTPDLEITSSQPLDG 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lolaNP_788308.3 BTB_POZ_BAB-like 31..114 CDD:349624 29/83 (35%)
C2H2 Zn finger 905..925 CDD:275368
zf-H2C2_5 935..957 CDD:404746
C2H2 Zn finger 935..955 CDD:275368
Btbd18NP_001417674.1 None
Blue background indicates that the domain is not in the aligned region.

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