DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and ZK418.11

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001022997.1 Gene:ZK418.11 / 3565390 WormBaseID:WBGene00044354 Length:301 Species:Caenorhabditis elegans


Alignment Length:343 Identity:63/343 - (18%)
Similarity:133/343 - (38%) Gaps:85/343 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 FRRSVR-KNHQYTC---RFARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSN 254
            |||:|. |....:|   ...:.|::.:.|: :|...:..:|..|.|:..:.    |..|      
 Worm     3 FRRAVNSKKPPKSCNPGECPQRCLIAEFKQ-KCPRRKFYECINANMRIASF----DIYS------ 56

  Fly   255 DDPDPGNGLSVISLVKAENESRQS---KAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVE 316
                  |...:|..:.:.:..||.   ......:.|..|.|..|    :..:|:.....:.|..:
 Worm    57 ------NKFKLIQDLMSSDAERQKIFYTCHVTADLNFEEMLDPK----LVKLCKKEMDVVFTSHD 111

  Fly   317 WAKQIPAFNELQLDDQVALLR-AHAGE-HLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPN 379
            |. .|.||..|:...::..:: .:|.| :|:|   :.|.....::.::......:  .:.:|.|.
 Worm   112 WV-AIEAFTTLEFMKRIHFVKMLNADEANLIL---KHSFFTLSIVFMAGRSYFDK--KEFMVFPG 170

  Fly   380 --------------LD-ISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHRI 429
                          || ::||..|:|.:.:    ::.|...|| .:..:.:|...:..|     :
 Worm   171 KVDVFPEEISDQYPLDLLNRIRCRLISKFI----ELRITTEEF-LLMVITYFCQISSML-----V 225

  Fly   430 KSLRHQILNNLEDYIS----------DRQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIFGV 484
            .|...:|   :|:|:|          :.:::..||...:.:|.  |..:..:.||.:  |::|.:
 Worm   226 GSSAKRI---IEEYLSIYLSTLGINCNFRFQKHGRIRYLNIIF--LSQLIEKTIEDL--AQLFTL 283

  Fly   485 AHID-------SLLQEML 495
            ..::       .|::|.|
 Worm   284 FQLNQPTLPLRKLVKESL 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 12/54 (22%)
NR_LBD_HNF4_like 264..494 CDD:132729 46/266 (17%)
ZK418.11NP_001022997.1 HOLI 118..273 CDD:214658 29/174 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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