DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and ZK418.10

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001022996.1 Gene:ZK418.10 / 3565356 WormBaseID:WBGene00044353 Length:293 Species:Caenorhabditis elegans


Alignment Length:304 Identity:57/304 - (18%)
Similarity:117/304 - (38%) Gaps:62/304 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 RNCV-VDKDKRN-----QCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISL 268
            ::|: .|:|.:.     .||:|    .||..:..:.|..:...|  :..|.|.....|.||.:::
 Worm     5 KHCISSDQDAKTYIAHPNCRFC----SFKRMVLSQDVNLQFTTI--KIASMDLAGLINNLSSLNI 63

  Fly   269 VKAE-----NESRQSKAGAAMEPNIN-------EDLSNKQFASINDVCESMKQQLLTLVEWAKQI 321
            .:.|     ....:|....|:...||       ...|.:::.|||.         |:.:::.|:.
 Worm    64 NRNEYFMDYYAKEKSSVDNAVISTINFIKKPPYLVFSMEEWTSINQ---------LSTIDFIKKF 119

  Fly   322 PAFNELQ-LDDQVALLRAHAGEHLLLGLSRRSMH-LKDVLLLSNNCVITRHCPDPLVSPNLDISR 384
            ...|:.. ..|:...:.....:..:...|.|..: .|..:....|..|.......|.:|:. :::
 Worm   120 DFVNQFSCYSDKSKFIHGVRFKSAIFSTSMRVFNEKKSYMHFPGNVDIFPEHSSQLFNPHF-LNK 183

  Fly   385 IGARIIDELVTVMKDVGIDDTEFACIKAL-----VFFDPNAKGLNEPHRIKS------LRHQILN 438
            |.:::|.:|:    ::.|...|...:.||     |..|.:.:|.|..::.:.      :.|..|.
 Worm   184 IRSQLIGKLI----ELDITKNESLLLSALFLCSAVHPDISTEGKNLLYKYQQYYSAALINHCCLT 244

  Fly   439 NLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIF 482
            |        |..:..|:.|:|.:..:::. |.|.:.  .||.::
 Worm   245 N--------QQNAPSRYSELLSLYQIIEE-THQKVN--NFAILY 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 9/40 (23%)
NR_LBD_HNF4_like 264..494 CDD:132729 43/244 (18%)
ZK418.10NP_001022996.1 HOLI 105..266 CDD:214658 32/183 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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