DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hnf4 and usp

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001259168.1 Gene:usp / 31165 FlyBaseID:FBgn0003964 Length:508 Species:Drosophila melanogaster


Alignment Length:544 Identity:147/544 - (27%)
Similarity:235/544 - (43%) Gaps:158/544 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DSSASRTASSDESESHIMHADALASAYPAASQPHSPIGLALSPNGGGLGLSNSSNQSSENFALCN 114
            ||:.|..:...||....|.|.::....|                        .||.:|.|     
  Fly    28 DSNNSSFSPKAESPVPFMQAMSMVHVLP------------------------GSNSASSN----- 63

  Fly   115 GNGNAGSA--------GGGSASSGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCA 171
             |.:||.|        .||||::..   ...:.||:.|||                   |..:|:
  Fly    64 -NNSAGDAQMAQAPNSAGGSAAAAV---QQQYPPNHPLSG-------------------SKHLCS 105

  Fly   172 ICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLRKCFKAGMK 236
            ||||||:|||||..||:||||||:|:|||:..|.||..|||::||.:||:|:|||.:||...|||
  Fly   106 ICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMK 170

  Fly   237 KEAVQNERD--------RISCRRTSNDDP---------------------DPGNG---------- 262
            :||||.||.        |:|.....:..|                     ..|||          
  Fly   171 REAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTNSVS 235

  Fly   263 --LSVISLVKAENESRQSKAG------------AAMEPNINEDLSNKQFASINDVCESMKQQLLT 313
              .|:..:::||..: :::.|            :.::|:..        .:::.:|:.:.:||..
  Fly   236 RDFSIERIIEAEQRA-ETQCGDRALTFLRVGPYSTVQPDYK--------GAVSALCQVVNKQLFQ 291

  Fly   314 LVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLS--------------------------RRS 352
            :||:|:.:|.|.::.|||||.||:|...|.|:..::                          |||
  Fly   292 MVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRS 356

  Fly   353 MHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFD 417
            ..|:...|..|.. .:.|....:   ...:|.|..||:.||...||.:.:|..|.:|:||::.::
  Fly   357 PGLQPQQLFLNQS-FSYHRNSAI---KAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYN 417

  Fly   418 PNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQFAKIF 482
            |:.:|:.....|:..|.::...|:::.........|||.::||.||.|:||:.:..:.:...:|.
  Fly   418 PDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRIT 482

  Fly   483 GVAHIDSLLQEMLLGGELADNPLP 506
            .    |..|:|:.|  |..:.|.|
  Fly   483 S----DRPLEELFL--EQLEAPPP 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 48/74 (65%)
NR_LBD_HNF4_like 264..494 CDD:132729 61/267 (23%)
uspNP_001259168.1 NR_DBD_RXR 102..178 CDD:143514 47/75 (63%)
NR_LBD_RXR_like 237..480 CDD:132741 58/255 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444773
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389616at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24083
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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