DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-117

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_001294719.1 Gene:nhr-117 / 24104436 WormBaseID:WBGene00003707 Length:477 Species:Caenorhabditis elegans


Alignment Length:498 Identity:100/498 - (20%)
Similarity:162/498 - (32%) Gaps:179/498 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 SASSGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRATGKHYGASSCDGC 190
            ||||.:::|.|  ||...|        ...|.|::         |.||.....|.|:||..|..|
 Worm     9 SASSSTSSNYS--SPPAVL--------DIDQVLEK---------CQICYQPGHGYHFGAFICRAC 54

  Fly   191 KGFFRRSVRKNH------QYTCR-FARNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRIS 248
            ..||||.    |      |..|| .:.:|..:|:.|..|:.||..||.:.||....:|.:||...
 Worm    55 AAFFRRC----HFSLALDQRKCRLLSGSCQPNKNGRWFCKKCRFDKCLELGMTTTNIQYDRDAFK 115

  Fly   249 -----------CRRTSNDDPDP----GNGLSVISLVKAENESRQS---KAGAAMEP--------- 286
                       .:|.::....|    .|...||..||...::..:   |||..::.         
 Worm   116 SSASFLKNKSVAKRVADRVSVPMQFSSNQRHVIYNVKNVFQTPPTALGKAGRTLDETDQRILCQN 180

  Fly   287 ------NINEDL------SNKQ--FASINDVCESMKQQLLT------------LVEWAKQIPAFN 325
                  .||..:      .|||  |..|:.:.:.....:||            |.:..:.:..|.
 Worm   181 TVESALGINPIMIFTYADENKQFPFIDISQLVDKALSSILTPISVRKIKKMSNLEQLTQGLDEFQ 245

  Fly   326 ELQLDDQVALLRAHAGEHL------------LLGLSRRSMHLKDVL------------------- 359
            ..|.:....::|..|.:||            .|..|.|..:|.|.|                   
 Worm   246 WTQKESVSQIVRLSANDHLNDFQTYMCAAAKWLSYSDRIRNLDDELKIQILQCIWFNWGRLERIA 310

  Fly   360 ----------------LLSNNCVITRHCPDPLVSPNLDISRIGARI------------------- 389
                            :.|||.:             ||...:.:.:                   
 Worm   311 TTAKMRNKRKCGKKQFVFSNNIL-------------LDYDEMSSDLSFWSNYTFEEMKYFFIPTE 362

  Fly   390 --IDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYE-- 450
              .||::..|::|..|:.|...|.:|:.|....|      :......:.::.|:|.:||..:|  
 Worm   363 MFYDEVICEMEEVQPDNMETTFIISLMCFHLTGK------QFGGQVQEEMDQLQDLLSDELHEYY 421

  Fly   451 -------SRGRFGEILLILPVLQSITWQMIEQIQFAKIFGVAH 486
                   ...|..:::.|......:.::..|:.:.|.||...|
 Worm   422 LKKNMTMYSLRLKQLMKIKEKFLKLRYKRCEKYKIAGIFEAFH 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 28/81 (35%)
NR_LBD_HNF4_like 264..494 CDD:132729 56/338 (17%)
nhr-117NP_001294719.1 ZnF_C4 33..103 CDD:197701 26/82 (32%)
Hormone_recep 248..453 CDD:278530 33/223 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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