DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-84

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_506968.1 Gene:nhr-84 / 191731 WormBaseID:WBGene00003674 Length:416 Species:Caenorhabditis elegans


Alignment Length:413 Identity:95/413 - (23%)
Similarity:152/413 - (36%) Gaps:90/413 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 NSSQQQLQQQQQQQSPTV---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARN-- 211
            :||...........||.:   |.:|...:.|.|:|..||..|..|||||.....:|.|| .||  
 Worm     7 SSSSASSPSTSDPPSPPIAAKCRVCAMPSRGNHFGVLSCRACAAFFRRSFVHKKEYKCR-QRNVG 70

  Fly   212 -CVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLS----------- 264
             |.|..:.|.|||.|||:||.:.||..|.||.:|:    ..:.:||..|....|           
 Worm    71 KCDVSGNDRYQCRACRLKKCKELGMTPENVQMDRN----SESFDDDMTPDGSFSLALEPVQHSTL 131

  Fly   265 ---------VISLVKAENESRQSKAGAAMEPNINED------LSNKQFASINDVCE--------- 305
                     :|.:....|..:...|| .|.|.||:|      |...:||..|...|         
 Worm   132 YQSLKNPKILIDVTPTLNRLKTVLAG-FMPPLINDDYFKMNTLERMKFALWNYRSERKFGDLKFE 195

  Fly   306 ----------SMKQQLLTLVEWAKQIPAFNELQLDDQVALL-----RAHAGEHLLLGLSR--RSM 353
                      ..:..|:.:..|......|..|.|::::.:.     |....|..|:.:..  ..:
 Worm   196 KHIIVEIPNKKWENDLIRIANWLLHSEHFRMLPLEEKMMIFKKIWARWRKFEKWLISVDTFGHKV 260

  Fly   354 HLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDE--------LVTVMKDVG--------- 401
            :.::|:      |.|.:....|...::|.|.|..|..:|        |..:.|:|.         
 Worm   261 YKENVI------VCTNYNAANLNKVHIDYSNITDRSNEEMSQLFGRQLWRMQKEVAKPLAELTPS 319

  Fly   402 -IDDTEFACIKALVFFDPNAKGLNEPHRIKSLRHQILNNLEDYISDRQYESRG-RFGEILLILPV 464
             |:.|...|.......|......:.....|.|. :|..||.:|...:..::.. |..:::.|:..
 Worm   320 TIEMTYMLCQLVWNSLDVELNNYSADIGDKFLA-EISENLHEYYMHQNVQNYAWRLQKLMKIVNN 383

  Fly   465 LQSITWQMIEQIQFAKIFGVAHI 487
            ::.|..:..|.::.|::|.|..|
 Worm   384 VKEIEREREEMMKLAELFDVFKI 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 34/77 (44%)
NR_LBD_HNF4_like 264..494 CDD:132729 53/295 (18%)
nhr-84NP_506968.1 ZnF_C4 27..98 CDD:197701 31/71 (44%)
Hormone_recep 188..385 CDD:278530 32/203 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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