DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hnf4 and nhr-82

DIOPT Version :9

Sequence 1:NP_723413.1 Gene:Hnf4 / 44544 FlyBaseID:FBgn0004914 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_493090.1 Gene:nhr-82 / 191729 WormBaseID:WBGene00003672 Length:326 Species:Caenorhabditis elegans


Alignment Length:348 Identity:86/348 - (24%)
Similarity:142/348 - (40%) Gaps:62/348 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 LQQQQQQQSPTVCAICG--DRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRN 220
            ::...|.:.|  |.:|.  || |.:|:|..:|..|..|||||.  ..||.|...:.|::..|::.
 Worm     1 MEATSQNRGP--CPVCSSMDR-TRRHFGIIACTACAAFFRRSF--GQQYLCNAEKKCIIMHDRKF 60

  Fly   221 QCRYCRLRKCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQSKAGAAME 285
            .||.||...|.||||:::.|         |:..|:...|.:..:.:.....|..|:.||.     
 Worm    61 FCRACRYSSCVKAGMRRDLV---------RKQKNNPRHPASLETQLPRNLPEMLSKFSKI----- 111

  Fly   286 PNINEDLSNKQFASINDVCESMKQ----------QLLTLVEWAKQIPAFNELQLDD-----QVAL 335
            .||:.|...|.:  ::.|.:::.|          |:.::||..|.....|.:.|||     .|.:
 Worm   112 LNIHHDELLKYY--VDGVEDTIAQKQNDNVMNALQIKSIVELHKISEMENNVVLDDCLNCPGVDV 174

  Fly   336 LRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSPNLDISRIGARIIDELVTVMKDV 400
            |.....|.||......::.:...|..|:.|:      :.......|.|.   ::.|.|..|...:
 Worm   175 LEQDDVEVLLKYFKFVNIWVYSALASSSTCL------EQFPEQTGDNSN---QLFDFLHQVRSTL 230

  Fly   401 G-------IDDTEFA-----CIKALVFFDPNA--KGLNEPHRIKSLRHQILNNLEDYISDRQYES 451
            |       ::..|:|     ||..|.||..:.  |.:.|.|.| .:...:....::..:..:.|.
 Worm   231 GSSLVRLNLNIFEYAAFKSFCIWNLKFFGTSTAMKIVAEEHHI-GITWALRKYYKESTNMTEVEI 294

  Fly   452 RGRFGEILLILPVLQSITWQMIE 474
            ..|.|:|.|.|..:..|...||:
 Worm   295 AARIGDITLQLLTVSDIFHDMIK 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hnf4NP_723413.1 NR_DBD_HNF4A 170..245 CDD:143518 29/76 (38%)
NR_LBD_HNF4_like 264..494 CDD:132729 52/240 (22%)
nhr-82NP_493090.1 ZnF_C4 10..78 CDD:197701 29/72 (40%)
HOLI 155..311 CDD:214658 35/165 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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